├── Capsule_Keras.py ├── FE_Model_Training.py ├── FE_Model_analysis_1.py ├── FE_Model_analysis_2.py ├── Model_Training.py ├── README.md ├── Visualization_Capsule_Keras.py ├── __pycache__ ├── Capsule_Keras.cpython-36.pyc └── Visualization_Capsule_Keras.cpython-36.pyc ├── comparison_model ├── Machine_Learning.py └── Neural_Networks.py ├── data ├── Demo_PBMC.weights ├── PBMC_celltype.npy ├── PBMC_data.rar ├── data_embedding_pca.npy ├── totalembedding_pca.npy └── totalembedding_tsne.npy ├── demo_reproducing_figures.ipynb └── old_files ├── Fig1CD_Fig2DE_Fig3.py ├── Fig2BC.py ├── Fig4.py ├── Fig5D.py └── Model_Training.py /Capsule_Keras.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wanglf19/scCaps/HEAD/Capsule_Keras.py -------------------------------------------------------------------------------- /FE_Model_Training.py: -------------------------------------------------------------------------------- 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