├── .Rbuildignore ├── .gitignore ├── .gitlab-ci.yml ├── .travis.yml ├── CONTRIBUTING.md ├── DESCRIPTION ├── Examples ├── Examples1.R └── GLMExamples.R ├── LICENSE ├── NAMESPACE ├── R ├── RcppExports.R ├── fit_mcglm.R ├── mc_KLIC.R ├── mc_RJC.R ├── mc_S3_methods.R ├── mc_anova_disp.R ├── mc_auxiliar.R ├── mc_bias_correct_std.R ├── mc_build_C.R ├── mc_build_F.R ├── mc_build_bdiag.R ├── mc_build_omega.R ├── mc_build_sigma.R ├── mc_build_sigmab.R ├── mc_car.R ├── mc_complete_data.R ├── mc_compute_rho.R ├── mc_conditional_test.R ├── mc_core_cross_variability.R ├── mc_core_pearson.R ├── mc_correction.R ├── mc_cross_sensitivity.R ├── mc_cross_variability.R ├── mc_derivative_C_rho.R ├── mc_derivative_cholesky.R ├── mc_derivative_expm.R ├── mc_derivative_sigma_beta.R ├── mc_dexp_gold.R ├── mc_dexpm.R ├── mc_dglm.R ├── mc_dist.R ├── mc_ess.R ├── mc_getInformation.R ├── mc_gof.R ├── mc_gosho.R ├── mc_id.R ├── mc_initial_values.R ├── mc_link_function.R ├── mc_list2vec.R ├── mc_ma.R ├── mc_main_function.R ├── mc_manova.R ├── mc_manova_disp.R ├── mc_matrix_linear_predictor.R ├── mc_mixed.R ├── mc_ns.R ├── mc_pAIC.R ├── mc_pBIC.R ├── mc_pearson.R ├── mc_plogLik.R ├── mc_quasi_score.R ├── mc_remove_na.R ├── mc_robust_std.R ├── mc_rw.R ├── mc_sensitivity.R ├── mc_sic.R ├── mc_sic_covariance.R ├── mc_transform_list_bdiag.R ├── mc_twin.R ├── mc_updatedBeta.R ├── mc_updatedCov.R ├── mc_variability.R ├── mc_variance_function.R ├── mcglm.R └── zzz_onAttach.R ├── README.Rmd ├── README.md ├── data-raw ├── Hunting.R ├── Hunting.txt ├── NewBorn.R ├── NewBorn.txt ├── RData2txt.R ├── ahs.R ├── ahs.txt ├── soil ├── soil.R ├── soya.R └── soya.txt ├── data ├── Hunting.RData ├── NewBorn.RData ├── ahs.RData ├── soil.RData └── soya.RData ├── downloads ├── mcglm-manual.pdf ├── mcglm_0.2.0.tar.gz ├── mcglm_0.2.0.zip ├── mcglm_0.3.0.tar.gz ├── mcglm_0.3.0.zip ├── mcglm_0.4.0.tar.gz └── mcglm_0.4.0.zip ├── inst └── CITATION ├── man ├── ESS.Rd ├── GOSHO.Rd ├── Hunting.Rd ├── NewBorn.Rd ├── RJC.Rd ├── ahs.Rd ├── anova.mcglm.Rd ├── coef.mcglm.Rd ├── confint.mcglm.Rd ├── covprod.Rd ├── fit_mcglm.Rd ├── fitted.mcglm.Rd ├── gof.Rd ├── mc_anova_disp.Rd ├── mc_bias_corrected_std.Rd ├── mc_build_C.Rd ├── mc_build_F.Rd ├── mc_build_bdiag.Rd ├── mc_build_omega.Rd ├── mc_build_sigma.Rd ├── mc_build_sigma_between.Rd ├── mc_car.Rd ├── mc_complete_data.Rd ├── mc_compute_rho.Rd ├── mc_conditional_test.Rd ├── mc_core_pearson.Rd ├── mc_correction.Rd ├── mc_cross_sensitivity.Rd ├── mc_cross_variability.Rd ├── mc_derivative_C_rho.Rd ├── mc_derivative_cholesky.Rd ├── mc_derivative_expm.Rd ├── mc_derivative_sigma_beta.Rd ├── mc_dexp_gold.Rd ├── mc_dglm.Rd ├── mc_dist.Rd ├── mc_expm.Rd ├── mc_getInformation.Rd ├── mc_id.Rd ├── mc_initial_values.Rd ├── mc_link_function.Rd ├── mc_list2vec.Rd ├── mc_ma.Rd ├── mc_manova.Rd ├── mc_manova_disp.Rd ├── mc_matrix_linear_predictor.Rd ├── mc_mixed.Rd ├── mc_ns.Rd ├── mc_pearson.Rd ├── mc_quasi_score.Rd ├── mc_remove_na.Rd ├── mc_robust_std.Rd ├── mc_rw.Rd ├── mc_sandwich.Rd ├── mc_sensitivity.Rd ├── mc_sic.Rd ├── mc_sic_covariance.Rd ├── mc_transform_list_bdiag.Rd ├── mc_twin.Rd ├── mc_updateBeta.Rd ├── mc_updateCov.Rd ├── mc_variability.Rd ├── mc_variance_function.Rd ├── mcglm.Rd ├── pAIC.Rd ├── pBIC.Rd ├── pKLIC.Rd ├── plogLik.Rd ├── plot.mcglm.Rd ├── print.mcglm.Rd ├── residuals.mcglm.Rd ├── soil.Rd ├── soya.Rd ├── summary.mcglm.Rd └── vcov.mcglm.Rd ├── mcglm.Rproj ├── src ├── .gitignore ├── RcppExports.cpp ├── mc_sensitivity_op.cpp └── mc_variability_op.cpp ├── tests ├── testthat.R └── testthat │ ├── test_mc_build_C.R │ ├── test_mc_build_omega.R │ ├── test_mc_build_sigma.R │ ├── test_mc_build_sigma_between.R │ ├── test_mc_link_function.R │ ├── test_mc_matrix_linear_predictor.R │ ├── test_mc_quasi_score.R │ └── test_mc_variance_function.R └── vignettes ├── .build.timestamp ├── .gitignore ├── GLMExamples.R ├── GLMExamples.Rmd ├── MathJax.html ├── UniModels.Rmd ├── _output.yaml └── style.css /.Rbuildignore: 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