├── .github ├── ISSUE_TEMPLATE │ ├── bug_report.md │ └── feature_request.md ├── dependabot.yml ├── mergify.yml └── workflows │ ├── codecov.yml │ ├── codeql-analysis.yml │ ├── stale.yml │ └── tox.yml ├── .gitignore ├── .idea ├── .gitignore ├── inspectionProfiles │ ├── Project_Default.xml │ └── profiles_settings.xml ├── misc.xml ├── modules.xml ├── mridc.iml └── vcs.xml ├── .pre-commit-config.yaml ├── .readthedocs.yaml ├── CITATION.cff ├── CODE_OF_CONDUCT.md ├── Dockerfile ├── LICENSE ├── README.md ├── SECURITY.md ├── codecov.yml ├── docs ├── Makefile ├── make.bat └── source │ ├── conf.py │ ├── index.rst │ ├── modules.rst │ ├── mridc.app.rst │ ├── mridc.cli.rst │ ├── mridc.collections.common.callbacks.rst │ ├── mridc.collections.common.data.rst │ ├── mridc.collections.common.losses.rst │ ├── mridc.collections.common.metrics.rst │ ├── mridc.collections.common.models.rst │ ├── mridc.collections.common.parts.rst │ ├── mridc.collections.common.rst │ ├── mridc.collections.multitask.rs.data.rst │ ├── mridc.collections.multitask.rs.models.idslr_base.rst │ ├── mridc.collections.multitask.rs.models.mtlrs_base.rst │ ├── mridc.collections.multitask.rs.models.rst │ ├── mridc.collections.multitask.rs.models.seranet_base.rst │ ├── mridc.collections.multitask.rs.parts.rst │ ├── mridc.collections.multitask.rs.rst │ ├── mridc.collections.multitask.rst │ ├── mridc.collections.quantitative.data.rst │ ├── mridc.collections.quantitative.models.qrim.rst │ ├── mridc.collections.quantitative.models.qvarnet.rst │ ├── mridc.collections.quantitative.models.rst │ ├── mridc.collections.quantitative.parts.rst │ ├── mridc.collections.quantitative.rst │ ├── mridc.collections.reconstruction.data.rst │ ├── mridc.collections.reconstruction.losses.rst │ ├── mridc.collections.reconstruction.metrics.rst │ ├── mridc.collections.reconstruction.models.cascadenet.rst │ ├── mridc.collections.reconstruction.models.conv.rst │ ├── mridc.collections.reconstruction.models.convrecnet.rst │ ├── mridc.collections.reconstruction.models.crossdomain.rst │ ├── mridc.collections.reconstruction.models.didn.rst │ ├── mridc.collections.reconstruction.models.multidomain.rst │ ├── mridc.collections.reconstruction.models.mwcnn.rst │ ├── mridc.collections.reconstruction.models.primaldual.rst │ ├── mridc.collections.reconstruction.models.recurrentvarnet.rst │ ├── mridc.collections.reconstruction.models.rim.rst │ ├── mridc.collections.reconstruction.models.rst │ ├── mridc.collections.reconstruction.models.sigmanet.rst │ ├── mridc.collections.reconstruction.models.unet_base.rst │ ├── mridc.collections.reconstruction.models.variablesplittingnet.rst │ ├── mridc.collections.reconstruction.models.varnet.rst │ ├── mridc.collections.reconstruction.parts.rst │ ├── mridc.collections.reconstruction.rst │ ├── mridc.collections.rst │ ├── mridc.collections.segmentation.data.rst │ ├── mridc.collections.segmentation.losses.rst │ ├── mridc.collections.segmentation.metrics.rst │ ├── mridc.collections.segmentation.models.attention_unet_base.rst │ ├── mridc.collections.segmentation.models.dynunet_base.rst │ ├── mridc.collections.segmentation.models.idslr_base.rst │ ├── mridc.collections.segmentation.models.jrscirim_base.rst │ ├── mridc.collections.segmentation.models.lambda_unet_base.rst │ ├── mridc.collections.segmentation.models.rst │ ├── mridc.collections.segmentation.models.seranet_base.rst │ ├── mridc.collections.segmentation.models.unet3d_base.rst │ ├── mridc.collections.segmentation.models.unetr_base.rst │ ├── mridc.collections.segmentation.models.vit_base.rst │ ├── mridc.collections.segmentation.models.vnet_base.rst │ ├── mridc.collections.segmentation.parts.rst │ ├── mridc.collections.segmentation.rst │ ├── mridc.core.classes.rst │ ├── mridc.core.conf.rst │ ├── mridc.core.connectors.rst │ ├── mridc.core.neural_types.rst │ ├── mridc.core.optim.rst │ ├── mridc.core.rst │ ├── mridc.core.utils.process_launcher.rst │ ├── mridc.core.utils.rst │ ├── mridc.rst │ ├── mridc.utils.decorators.rst │ ├── mridc.utils.formaters.rst │ └── mridc.utils.rst ├── examples ├── base_cirim_train.yaml ├── mridc.sh ├── reconstruction.ipynb └── utils.py ├── mridc ├── __init__.py ├── app │ ├── __init__.py │ ├── launch.py │ └── run.py ├── cli │ ├── __init__.py │ └── launch.py ├── collections │ ├── __init__.py │ ├── common │ │ ├── __init__.py │ │ ├── callbacks │ │ │ ├── __init__.py │ │ │ ├── callbacks.py │ │ │ └── ema.py │ │ ├── data │ │ │ ├── __init__.py │ │ │ ├── mri_loader.py │ │ │ └── subsample.py │ │ ├── losses │ │ │ ├── __init__.py │ │ │ ├── aggregator.py │ │ │ └── ssim.py │ │ ├── metrics │ │ │ ├── __init__.py │ │ │ ├── global_average_loss_metric.py │ │ │ ├── reconstruction_metrics.py │ │ │ └── segmentation_metrics.py │ │ ├── nn │ │ │ ├── __init__.py │ │ │ └── base.py │ │ └── parts │ │ │ ├── __init__.py │ │ │ ├── fft.py │ │ │ ├── patch_utils.py │ │ │ ├── ptl_overrides.py │ │ │ ├── rnn_utils.py │ │ │ ├── training_utils.py │ │ │ ├── transforms.py │ │ │ └── utils.py │ ├── multitask │ │ ├── __init__.py │ │ └── rs │ │ │ ├── __init__.py │ │ │ ├── data │ │ │ ├── __init__.py │ │ │ └── mrirs_loader.py │ │ │ ├── nn │ │ │ ├── __init__.py │ │ │ ├── base.py │ │ │ ├── idslr.py │ │ │ ├── idslr_base │ │ │ │ ├── __init__.py │ │ │ │ └── idslr_block.py │ │ │ ├── idslr_unet.py │ │ │ ├── mtlrs.py │ │ │ ├── mtlrs_base │ │ │ │ ├── __init__.py │ │ │ │ └── mtlrs_block.py │ │ │ ├── recseg_unet.py │ │ │ ├── segnet.py │ │ │ ├── seranet.py │ │ │ └── seranet_base │ │ │ │ ├── __init__.py │ │ │ │ ├── convlstm.py │ │ │ │ ├── convlstm_unet.py │ │ │ │ └── recon_block.py │ │ │ └── parts │ │ │ ├── __init__.py │ │ │ └── transforms.py │ ├── quantitative │ │ ├── __init__.py │ │ ├── data │ │ │ ├── __init__.py │ │ │ ├── qmri_data.py │ │ │ └── qmri_loader.py │ │ ├── models │ │ │ ├── __init__.py │ │ │ ├── base.py │ │ │ ├── qcirim.py │ │ │ ├── qrim │ │ │ │ ├── __init__.py │ │ │ │ ├── qrim_block.py │ │ │ │ └── utils.py │ │ │ ├── qvarnet │ │ │ │ ├── __init__.py │ │ │ │ └── qvn_block.py │ │ │ └── qvn.py │ │ ├── nn │ │ │ ├── __init__.py │ │ │ ├── base.py │ │ │ ├── qcirim.py │ │ │ ├── qrim │ │ │ │ ├── __init__.py │ │ │ │ ├── qrim_block.py │ │ │ │ └── utils.py │ │ │ ├── qvarnet │ │ │ │ ├── __init__.py │ │ │ │ └── qvn_block.py │ │ │ └── qvn.py │ │ └── parts │ │ │ ├── __init__.py │ │ │ └── transforms.py │ ├── reconstruction │ │ ├── __init__.py │ │ ├── data │ │ │ ├── __init__.py │ │ │ ├── mri_data.py │ │ │ ├── mri_reconstruction_loader.py │ │ │ └── subsample.py │ │ ├── losses │ │ │ ├── __init__.py │ │ │ └── ssim.py │ │ ├── metrics │ │ │ ├── __init__.py │ │ │ └── reconstruction_metrics.py │ │ ├── models │ │ │ ├── __init__.py │ │ │ ├── base.py │ │ │ ├── cascadenet │ │ │ │ ├── __init__.py │ │ │ │ └── ccnn_block.py │ │ │ ├── ccnn.py │ │ │ ├── cirim.py │ │ │ ├── conv │ │ │ │ ├── __init__.py │ │ │ │ ├── conv2d.py │ │ │ │ └── gruconv2d.py │ │ │ ├── convrecnet │ │ │ │ ├── __init__.py │ │ │ │ └── crnn_block.py │ │ │ ├── crnn.py │ │ │ ├── crossdomain │ │ │ │ ├── __init__.py │ │ │ │ ├── crossdomain.py │ │ │ │ └── multicoil.py │ │ │ ├── didn │ │ │ │ ├── __init__.py │ │ │ │ └── didn.py │ │ │ ├── dunet.py │ │ │ ├── jointicnet.py │ │ │ ├── kikinet.py │ │ │ ├── lpd.py │ │ │ ├── multidomain │ │ │ │ ├── __init__.py │ │ │ │ └── multidomain.py │ │ │ ├── multidomainnet.py │ │ │ ├── mwcnn │ │ │ │ ├── __init__.py │ │ │ │ └── mwcnn.py │ │ │ ├── pics.py │ │ │ ├── primaldual │ │ │ │ ├── __init__.py │ │ │ │ └── pd.py │ │ │ ├── recurrentvarnet │ │ │ │ ├── __init__.py │ │ │ │ ├── conv2gru.py │ │ │ │ └── recurrentvarnet.py │ │ │ ├── rim │ │ │ │ ├── __init__.py │ │ │ │ ├── conv_layers.py │ │ │ │ ├── rim_block.py │ │ │ │ ├── rim_utils.py │ │ │ │ └── rnn_cells.py │ │ │ ├── rvn.py │ │ │ ├── sigmanet │ │ │ │ ├── __init__.py │ │ │ │ ├── dc_layers.py │ │ │ │ └── sensitivity_net.py │ │ │ ├── unet.py │ │ │ ├── unet_base │ │ │ │ ├── __init__.py │ │ │ │ └── unet_block.py │ │ │ ├── variablesplittingnet │ │ │ │ ├── __init__.py │ │ │ │ └── vsnet_block.py │ │ │ ├── varnet │ │ │ │ ├── __init__.py │ │ │ │ └── vn_block.py │ │ │ ├── vn.py │ │ │ ├── vsnet.py │ │ │ ├── xpdnet.py │ │ │ └── zf.py │ │ ├── nn │ │ │ ├── __init__.py │ │ │ ├── base.py │ │ │ ├── cascadenet │ │ │ │ ├── __init__.py │ │ │ │ └── ccnn_block.py │ │ │ ├── ccnn.py │ │ │ ├── cirim.py │ │ │ ├── conv │ │ │ │ ├── __init__.py │ │ │ │ ├── conv2d.py │ │ │ │ └── gruconv2d.py │ │ │ ├── convrecnet │ │ │ │ ├── __init__.py │ │ │ │ └── crnn_block.py │ │ │ ├── crnn.py │ │ │ ├── crossdomain │ │ │ │ ├── __init__.py │ │ │ │ ├── crossdomain.py │ │ │ │ └── multicoil.py │ │ │ ├── cs.py │ │ │ ├── didn │ │ │ │ ├── __init__.py │ │ │ │ └── didn.py │ │ │ ├── dunet.py │ │ │ ├── jointicnet.py │ │ │ ├── kikinet.py │ │ │ ├── lpd.py │ │ │ ├── multidomain │ │ │ │ ├── __init__.py │ │ │ │ └── multidomain.py │ │ │ ├── multidomainnet.py │ │ │ ├── mwcnn │ │ │ │ ├── __init__.py │ │ │ │ └── mwcnn.py │ │ │ ├── pics.py │ │ │ ├── primaldual │ │ │ │ ├── __init__.py │ │ │ │ └── pd.py │ │ │ ├── proximal_gradient.py │ │ │ ├── recurrentvarnet │ │ │ │ ├── __init__.py │ │ │ │ ├── conv2gru.py │ │ │ │ └── recurrentvarnet.py │ │ │ ├── resnet.py │ │ │ ├── resnet_base │ │ │ │ ├── __init__.py │ │ │ │ └── resnet_block.py │ │ │ ├── rim │ │ │ │ ├── __init__.py │ │ │ │ ├── conv_layers.py │ │ │ │ ├── rim_block.py │ │ │ │ ├── rim_utils.py │ │ │ │ └── rnn_cells.py │ │ │ ├── rvn.py │ │ │ ├── sigmanet │ │ │ │ ├── __init__.py │ │ │ │ ├── dc_layers.py │ │ │ │ └── sensitivity_net.py │ │ │ ├── unet.py │ │ │ ├── unet_base │ │ │ │ ├── __init__.py │ │ │ │ └── unet_block.py │ │ │ ├── variablesplittingnet │ │ │ │ ├── __init__.py │ │ │ │ └── vsnet_block.py │ │ │ ├── varnet │ │ │ │ ├── __init__.py │ │ │ │ └── vn_block.py │ │ │ ├── vn.py │ │ │ ├── vsnet.py │ │ │ ├── xpdnet.py │ │ │ └── zf.py │ │ └── parts │ │ │ ├── __init__.py │ │ │ └── transforms.py │ └── segmentation │ │ ├── __init__.py │ │ ├── data │ │ ├── __init__.py │ │ ├── mri_data.py │ │ └── mri_segmentation_loader.py │ │ ├── losses │ │ ├── __init__.py │ │ ├── cross_entropy.py │ │ ├── dice.py │ │ └── utils.py │ │ ├── metrics │ │ ├── __init__.py │ │ └── segmentation_metrics.py │ │ ├── models │ │ ├── __init__.py │ │ ├── attention_unet.py │ │ ├── attention_unet_base │ │ │ ├── __init__.py │ │ │ └── attention_unet_block.py │ │ ├── base.py │ │ ├── dynunet.py │ │ ├── dynunet_base │ │ │ ├── __init__.py │ │ │ └── dynunet_block.py │ │ ├── idslr.py │ │ ├── idslr_base │ │ │ ├── __init__.py │ │ │ └── idslr_block.py │ │ ├── idslr_unet.py │ │ ├── jrscirim.py │ │ ├── jrscirim_base │ │ │ ├── __init__.py │ │ │ └── jrscirim_block.py │ │ ├── lambda_unet.py │ │ ├── lambda_unet_base │ │ │ ├── __init__.py │ │ │ └── lambda_unet_block.py │ │ ├── recseg_unet.py │ │ ├── segnet.py │ │ ├── seranet.py │ │ ├── seranet_base │ │ │ ├── __init__.py │ │ │ ├── convlstm.py │ │ │ ├── convlstm_unet.py │ │ │ └── recon_block.py │ │ ├── unet.py │ │ ├── unet3d.py │ │ ├── unet3d_base │ │ │ ├── __init__.py │ │ │ └── unet3d_block.py │ │ ├── unetr.py │ │ ├── unetr_base │ │ │ ├── __init__.py │ │ │ └── unetr_block.py │ │ ├── vit_base │ │ │ ├── __init__.py │ │ │ ├── patchembedding.py │ │ │ ├── transformer_block.py │ │ │ ├── utils.py │ │ │ └── vit_block.py │ │ ├── vnet.py │ │ └── vnet_base │ │ │ ├── __init__.py │ │ │ └── vnet_block.py │ │ ├── nn │ │ ├── __init__.py │ │ ├── attention_unet.py │ │ ├── attention_unet_base │ │ │ ├── __init__.py │ │ │ └── attention_unet_block.py │ │ ├── base.py │ │ ├── dynunet.py │ │ ├── dynunet_base │ │ │ ├── __init__.py │ │ │ └── dynunet_block.py │ │ ├── lambda_unet.py │ │ ├── lambda_unet_base │ │ │ ├── __init__.py │ │ │ └── lambda_unet_block.py │ │ ├── unet.py │ │ ├── unet3d.py │ │ ├── unet3d_base │ │ │ ├── __init__.py │ │ │ └── unet3d_block.py │ │ ├── unetr.py │ │ ├── unetr_base │ │ │ ├── __init__.py │ │ │ └── unetr_block.py │ │ ├── vit_base │ │ │ ├── __init__.py │ │ │ ├── patchembedding.py │ │ │ ├── transformer_block.py │ │ │ ├── utils.py │ │ │ └── vit_block.py │ │ ├── vnet.py │ │ └── vnet_base │ │ │ ├── __init__.py │ │ │ └── vnet_block.py │ │ └── parts │ │ ├── __init__.py │ │ ├── transforms.py │ │ └── utils.py ├── constants.py ├── core │ ├── __init__.py │ ├── classes │ │ ├── __init__.py │ │ ├── common.py │ │ ├── dataset.py │ │ ├── export.py │ │ ├── loss.py │ │ ├── modelPT.py │ │ └── module.py │ ├── conf │ │ ├── __init__.py │ │ ├── base_config.py │ │ ├── dataloader.py │ │ ├── hydra_runner.py │ │ ├── modelPT.py │ │ ├── optimizers.py │ │ ├── schedulers.py │ │ └── trainer.py │ ├── connectors │ │ ├── __init__.py │ │ └── save_restore_connector.py │ ├── neural_types │ │ ├── __init__.py │ │ ├── axes.py │ │ ├── comparison.py │ │ ├── elements.py │ │ └── neural_type.py │ ├── optim │ │ ├── __init__.py │ │ ├── adafactor.py │ │ ├── lr_scheduler.py │ │ ├── novograd.py │ │ ├── optimizer_with_main_params.py │ │ ├── optimizer_with_master_params.py │ │ ├── optimizers.py │ │ └── radam.py │ └── utils │ │ ├── __init__.py │ │ ├── neural_type_utils.py │ │ ├── numba_utils.py │ │ └── process_launcher │ │ ├── __init__.py │ │ └── launcher.py ├── launch.py ├── package_info.py └── utils │ ├── __init__.py │ ├── app_state.py │ ├── arguments.py │ ├── cast_utils.py │ ├── cloud.py │ ├── config_utils.py │ ├── data_utils.py │ ├── debug_hook.py │ ├── decorators │ ├── __init__.py │ ├── deprecated.py │ ├── experimental.py │ └── port_docs.py │ ├── distributed.py │ ├── env_var_parsing.py │ ├── exceptions.py │ ├── exp_manager.py │ ├── export_utils.py │ ├── formaters │ ├── __init__.py │ ├── base.py │ ├── colors.py │ └── utils.py │ ├── get_rank.py │ ├── lightning_logger_patch.py │ ├── metaclasses.py │ ├── model_utils.py │ ├── mridc_logging.py │ └── timers.py ├── projects ├── README.md ├── __init__.py ├── export_bart_path.sh ├── multitask │ ├── __init__.py │ └── model_zoo │ │ └── conf │ │ ├── base_idslr_run.yaml │ │ ├── base_idslr_train.yaml │ │ ├── base_idslrunet_run.yaml │ │ ├── base_idslrunet_train.yaml │ │ ├── base_jrs_run.yaml │ │ ├── base_jrs_train.yaml │ │ ├── base_mtlrs_run.yaml │ │ ├── base_mtlrs_train.yaml │ │ ├── base_recsegnet_run.yaml │ │ ├── base_recsegnet_train.yaml │ │ ├── base_segnet_run.yaml │ │ ├── base_segnet_train.yaml │ │ ├── base_seranet_run.yaml │ │ └── base_seranet_train.yaml ├── quantitative │ ├── __init__.py │ ├── datasets │ │ ├── __init__.py │ │ └── ahead │ │ │ ├── __init__.py │ │ │ ├── batch_preprocessing.sh │ │ │ ├── getting-started.ipynb │ │ │ ├── preprocessing.py │ │ │ ├── reformat.py │ │ │ └── test.py │ └── model_zoo │ │ └── conf │ │ ├── base_cirim_train.yaml │ │ ├── base_qcirim_run.yaml │ │ ├── base_qcirim_train.yaml │ │ ├── base_qrim_run.yaml │ │ ├── base_qrim_train.yaml │ │ ├── base_qvn_run.yaml │ │ └── base_qvn_train.yaml ├── reconstruction │ ├── __init__.py │ ├── datasets │ │ ├── CC359 │ │ │ ├── __init__.py │ │ │ └── compute_masks.py │ │ └── __init__.py │ └── model_zoo │ │ └── conf │ │ ├── base_ccnn_run.yaml │ │ ├── base_ccnn_train.yaml │ │ ├── base_cirim_run.yaml │ │ ├── base_cirim_train.yaml │ │ ├── base_crnn_run.yaml │ │ ├── base_crnn_train.yaml │ │ ├── base_dunet_run.yaml │ │ ├── base_dunet_train.yaml │ │ ├── base_jointicnet_run.yaml │ │ ├── base_jointicnet_train.yaml │ │ ├── base_kikinet_run.yaml │ │ ├── base_kikinet_train.yaml │ │ ├── base_lpdnet_run.yaml │ │ ├── base_lpdnet_train.yaml │ │ ├── base_multidomainnet_run.yaml │ │ ├── base_multidomainnet_train.yaml │ │ ├── base_pics_run.yaml │ │ ├── base_resnet_run.yaml │ │ ├── base_resnet_train.yaml │ │ ├── base_rim_run.yaml │ │ ├── base_rim_train.yaml │ │ ├── base_rvn_run.yaml │ │ ├── base_rvn_train.yaml │ │ ├── base_ssdu_resnet_train.yaml │ │ ├── base_unet_run.yaml │ │ ├── base_unet_train.yaml │ │ ├── base_vn_run.yaml │ │ ├── base_vn_train.yaml │ │ ├── base_vsnet_run.yaml │ │ ├── base_vsnet_train.yaml │ │ ├── base_xpdnet_run.yaml │ │ ├── base_xpdnet_train.yaml │ │ └── base_zf_run.yaml ├── segmentation │ ├── __init__.py │ └── model_zoo │ │ └── conf │ │ ├── base_attentionunet_run.yaml │ │ ├── base_attentionunet_train.yaml │ │ ├── base_dynunet_run.yaml │ │ ├── base_dynunet_train.yaml │ │ ├── base_lambdaunet2d_run.yaml │ │ ├── base_lambdaunet2d_train.yaml │ │ ├── base_lambdaunet3d_run.yaml │ │ ├── base_lambdaunet3d_train.yaml │ │ ├── base_unet2d_run.yaml │ │ ├── base_unet2d_train.yaml │ │ ├── base_unet3d_run.yaml │ │ ├── base_unet3d_train.yaml │ │ ├── base_unetr_run.yaml │ │ ├── base_unetr_train.yaml │ │ ├── base_vnet_run.yaml │ │ └── base_vnet_train.yaml └── unselfsupervised │ ├── base_cirim_run.yaml │ ├── base_cirim_train.yaml │ ├── base_cs_run.yaml │ ├── base_n2r_fullunsup_test.yaml │ ├── base_n2r_fullunsup_train.yaml │ ├── base_n2r_test.yaml │ ├── base_n2r_train.yaml │ ├── base_pg_run.yaml │ ├── base_pics_run.yaml │ ├── base_resnet_test.yaml │ ├── base_resnet_train.yaml │ ├── base_ssdu_test.yaml │ ├── base_ssdu_train.yaml │ ├── base_target_run.yaml │ ├── base_unet_test.yaml │ ├── base_unet_train.yaml │ ├── base_zf_run.yaml │ ├── edit_trainedmodel_files.py │ ├── evaluate_reconstruction.py │ ├── generate_dataset_json.py │ └── plot_recons.py ├── pyproject.toml ├── reinstall.sh ├── requirements └── requirements.txt ├── setup.cfg ├── setup.py └── tests ├── __init__.py ├── backend ├── __init__.py ├── test_mridc_collections_common_callbacks_callbacks_failing.py ├── test_mridc_collections_common_losses_aggregator_failing.py ├── test_mridc_collections_common_parts_rnn_utils.py ├── test_mridc_collections_common_parts_rnn_utils_failing.py ├── test_mridc_collections_common_parts_training_utils.py ├── test_mridc_collections_quantitative_data_qmri_data_failing.py ├── test_mridc_collections_reconstruction_data_mri_data_failing.py ├── test_mridc_collections_reconstruction_metrics_evaluate_failing.py ├── test_mridc_collections_reconstruction_models_conv_conv2d_failing.py ├── test_mridc_collections_reconstruction_models_primaldual_pd_failing.py ├── test_mridc_collections_reconstruction_models_rim_conv_layers_failing.py ├── test_mridc_collections_reconstruction_models_rim_rnn_cells_failing.py ├── test_mridc_collections_reconstruction_models_sigmanet_dc_layers_failing.py ├── test_mridc_collections_reconstruction_models_sigmanet_sensitivity_net_failing.py ├── test_mridc_collections_segmentation_data_mri_data_failing.py ├── test_mridc_collections_segmentation_parts_transforms.py ├── test_mridc_collections_segmentation_parts_transforms_failing.py ├── test_mridc_core_classes_dataset_failing.py ├── test_mridc_core_classes_export_failing.py ├── test_mridc_core_classes_loss.py ├── test_mridc_core_classes_loss_failing.py ├── test_mridc_core_conf_base_config.py ├── test_mridc_core_conf_base_config_failing.py ├── test_mridc_core_conf_dataloader.py ├── test_mridc_core_conf_dataloader_failing.py ├── test_mridc_core_conf_hydra_runner.py ├── test_mridc_core_conf_hydra_runner_failing.py ├── test_mridc_core_conf_modelPT.py ├── test_mridc_core_conf_modelPT_failing.py ├── test_mridc_core_conf_trainer.py ├── test_mridc_core_neural_types_elements_failing.py ├── test_mridc_core_neural_types_neural_type_failing.py ├── test_mridc_core_optim_adafactor_failing.py ├── test_mridc_core_optim_novograd_failing.py ├── test_mridc_core_optim_optimizer_with_master_params_failing.py ├── test_mridc_core_utils_neural_type_utils.py ├── test_mridc_core_utils_neural_type_utils_failing.py ├── test_mridc_utils_app_state.py ├── test_mridc_utils_app_state_failing.py ├── test_mridc_utils_distributed_failing.py ├── test_mridc_utils_env_var_parsing_failing.py ├── test_mridc_utils_formaters_base.py ├── test_mridc_utils_formaters_base_failing.py ├── test_mridc_utils_formaters_colors.py ├── test_mridc_utils_formaters_colors_failing.py ├── test_mridc_utils_formaters_utils_failing.py ├── test_mridc_utils_get_rank.py ├── test_mridc_utils_metaclasses_failing.py └── test_mridc_utils_timers_failing.py ├── collections ├── __init__.py ├── multitask │ ├── __init__.py │ └── rs │ │ ├── __init__.py │ │ └── models │ │ ├── __init__.py │ │ ├── test_idslr.py │ │ ├── test_idslrunet.py │ │ ├── test_mtlrs.py │ │ ├── test_recseg_unet.py │ │ ├── test_segnet.py │ │ └── test_seranet.py ├── quantitative │ └── models │ │ ├── test_qcirim.py │ │ ├── test_qrim.py │ │ └── test_qvn.py ├── reconstruction │ ├── __init__.py │ ├── fastmri │ │ ├── __init__.py │ │ ├── conftest.py │ │ ├── create_temp_data.py │ │ └── test_mri_data.py │ ├── models │ │ ├── __init__.py │ │ ├── test_ccnn.py │ │ ├── test_cirim.py │ │ ├── test_conv.py │ │ ├── test_conv2dgru.py │ │ ├── test_crnn.py │ │ ├── test_didn.py │ │ ├── test_dunet.py │ │ ├── test_jointicnet.py │ │ ├── test_kikinet.py │ │ ├── test_lpdnet.py │ │ ├── test_multidomainnet.py │ │ ├── test_mwcnn.py │ │ ├── test_recurrentvarnet.py │ │ ├── test_unet.py │ │ ├── test_vn.py │ │ ├── test_vsnet.py │ │ └── test_xpdnet.py │ ├── test_fft.py │ ├── test_subsample.py │ └── test_transforms.py └── segmentation │ └── models │ ├── test_3dunet.py │ ├── test_attention_unet.py │ ├── test_dynunet.py │ ├── test_idslr.py │ ├── test_idslrunet.py │ ├── test_jrscirim.py │ 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