├── .gitignore ├── LICENSE ├── README.md ├── easysurrogate ├── __init__.py ├── analysis │ ├── ANN_analysis.py │ ├── CCM_analysis.py │ ├── DAS_analysis.py │ ├── GP_analysis.py │ ├── KMN_analysis.py │ ├── QSN_analysis.py │ ├── __init__.py │ └── base.py ├── campaign.py └── methods │ ├── Concatenate.py │ ├── DAS_Layer.py │ ├── DAS_network.py │ ├── Feature_Engineering.py │ ├── GP.py │ ├── Layer.py │ ├── NN.py │ ├── SimpleBin.py │ ├── __init__.py │ ├── ann_surrogate.py │ ├── batch_normalization.py │ ├── ccm_surrogate.py │ ├── das_surrogate.py │ ├── gaussian_process_regressor.py │ ├── gp_surrogate.py │ ├── kmn_surrogate.py │ ├── qsn_surrogate.py │ ├── reduced_surrogate.py │ └── resampling.py ├── fix_pep8.sh ├── setup.py ├── tests ├── __pycache__ │ └── data.cpython-37.pyc ├── deep_active_subspaces │ ├── generate_easyvvuq_dataframe.py │ ├── model │ │ ├── func.py │ │ └── func.template │ └── train_DAS_surrogate.py ├── easyvvuq_easysurrogate_coupling │ ├── coupling_example.py │ └── model │ │ ├── g_func.py │ │ └── g_func.template ├── fusion_tutorial │ ├── fusion.py │ ├── fusion.template │ ├── fusion_model.py │ ├── fusion_tutorial.py │ ├── gp_surrogate_analysis.py │ ├── gp_surrogate_predict.py │ ├── load_data.py │ ├── save_data.py │ └── train_gp_surrogate.py ├── gem_gp │ ├── gem0_lhc_res.csv │ ├── gem_data.py │ ├── gem_data_625.txt │ ├── gem_gp.py │ ├── retrain_model.py │ └── train_model.py ├── gray_scott_reduced │ ├── gray_scott_analysis.py │ ├── gray_scott_rk4.py │ ├── restart │ │ └── test_gray_scott_reduced_t_10000.0.hdf5 │ ├── samples │ │ └── gray_scott_reference.hdf5 │ └── train_reduced_surrogate.py ├── gray_scott_reduced_muscle3 │ ├── __pycache__ │ │ ├── macro.cpython-37.pyc │ │ └── micro.cpython-37.pyc │ ├── gray_scott_ensemble.py │ ├── macro.py │ ├── micro.py │ └── run.py ├── gray_scott_reduced_online │ ├── GrayScott_2D.py │ ├── __pycache__ │ │ └── GrayScott_2D.cpython-37.pyc │ ├── gray_scott_analysis.py │ ├── train_ann_surrogate.py │ ├── train_online_reduced_surrogate.py │ ├── train_reduced_surrogate.py │ └── upscaling_test.py ├── lorenz63_ccm │ ├── lorenz63.py │ ├── lorenz63_analysis.py │ ├── lorenz63_ccm.py │ └── train_surrogate.py ├── lorenz96_ann │ ├── lorenz96.py │ ├── lorenz96_analysis.py │ ├── lorenz96_ann.py │ └── train_surrogate.py ├── lorenz96_kmn │ ├── figures │ │ ├── acf.png │ │ ├── ccf.png │ │ └── pdf.png │ ├── lorenz96.py │ ├── lorenz96_analysis.py │ ├── lorenz96_kmn.py │ └── train_surrogate.py ├── lorenz96_online │ ├── lorenz96.py │ ├── lorenz96_Rasp.py │ ├── lorenz96_analysis.py │ └── train_surrogate.py ├── lorenz96_qsn │ ├── .l96.mp4 │ ├── lorenz96.py │ ├── lorenz96_analysis.py │ ├── lorenz96_qsn.py │ ├── pdf.png │ ├── train_surrogate.py │ └── train_surrogate_with_neighbourhood.py ├── poly_active_subspace │ ├── sc │ │ ├── poly.template │ │ └── poly_model.py │ └── train_surrogate.py └── vorticity_online │ ├── Vorticity_2D.py │ ├── generate_data.py │ ├── multiscale_solver.py │ ├── online_prediction.py │ ├── plot_results.py │ ├── restart │ ├── state_HR_t4150.hdf5 │ ├── state_HR_t4150_N2.hdf5 │ ├── state_HR_t500_N2.hdf5 │ ├── state_HR_t501.hdf5 │ ├── state_LR_t4150.hdf5 │ ├── state_LR_t4150_N2.hdf5 │ ├── state_LR_t500_N2.hdf5 │ └── state_LR_t501.hdf5 │ ├── train_ann_surrogate.py │ └── vorticity_analysis.py └── tutorials ├── EasyVVUQ_coupling ├── coupling.md └── forward.png ├── GAN ├── .ipynb_checkpoints │ └── GAN_tutorial-checkpoint.ipynb ├── GAN.png └── GAN_tutorial.ipynb ├── General └── general.md ├── L96_ANN ├── L96_ANN.md └── L96_pdf_ANN.png ├── L96_KMN ├── L96_KMN.md ├── L96_pdf_KMN.png └── kvm.gif ├── L96_QSN ├── L96_QSN.md ├── L96_pdf_QSN.png ├── qsn.gif └── qsn_pred.gif ├── batch_normalization ├── .ipynb_checkpoints │ ├── GAN_tutorial-checkpoint.ipynb │ └── batch_norm_tutorial-checkpoint.ipynb ├── GAN.png ├── batch_norm_tutorial.ipynb └── bn.png ├── cGAN ├── .ipynb_checkpoints │ ├── GAN_tutorial-checkpoint.ipynb │ └── cGAN_tutorial-checkpoint.ipynb ├── GAN.png └── cGAN_tutorial.ipynb ├── deep_active_subspaces ├── DAS_tutorial.md ├── contours1.png ├── contours2.png ├── contours3.png ├── contours4.png ├── forward.png ├── nn.png ├── nn2.png ├── report_DAS.pdf └── sensitivity.png ├── deep_active_subspaces_HIV ├── .ipynb_checkpoints │ └── HIV-checkpoint.ipynb ├── HIV.ipynb ├── HIV_data.py ├── HIV_model.py ├── gradients.csv └── my_samples.hdf5 ├── fusion_transport_GP ├── fusion_transport.md └── pdf_Te_GP.png ├── gray_scott ├── Gray_Scott.md ├── pdfs.png └── snapshot_0.png ├── gray_scott_muscle3 ├── gray_scott_coupling.png └── gray_scott_muscle3.md ├── reduced_Navier_Stokes ├── .ipynb_checkpoints │ └── Reduced_Navier_Stokes-checkpoint.ipynb ├── Reduced_Navier_Stokes.ipynb ├── Vorticity_2D.py ├── inputs │ └── input.yml └── restart │ ├── state_HR_t365_N1.hdf5 │ └── state_LR_t365_N1.hdf5 ├── tutorial_paper ├── .ipynb_checkpoints │ └── L96_tutorial-checkpoint.ipynb ├── L96.py ├── L96_tutorial.ipynb ├── __pycache__ │ └── L96.cpython-37.pyc ├── 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