├── .Rbuildignore ├── .gitignore ├── .travis.yml ├── DESCRIPTION ├── NAMESPACE ├── NeonTreeEvaluation.Rproj ├── R ├── IoU.R ├── OSBS.R ├── PR.R ├── assign_trees.R ├── boxes_to_spatial_polygons.R ├── calc_jaccard.R ├── canopy_model.R ├── check_download.R ├── compute_precision_recall.R ├── count_trees.R ├── crown_polygons.R ├── download.R ├── evaluate_field_crowns.R ├── evaluate_field_stems.R ├── evaluate_image_crowns.R ├── evaluate_plot.R ├── extract_coordinates.R ├── field.R ├── field_crowns.R ├── get_data.R ├── image_crowns.R ├── list_annotations.R ├── list_chm.R ├── list_field_crowns.R ├── list_field_stems.R ├── list_rgb.R ├── load_field_crown.R ├── load_ground_truth.R ├── polygon_overlap.R ├── polygon_overlap_all.R ├── project.R ├── readTreeXML.R ├── sf_to_spatial_polygons.R ├── stem_plot.R ├── submission.R ├── summary_statistics.R ├── xml_parse.R ├── zenodo_url.R └── zzz.R ├── README.Rmd ├── README.md ├── data ├── crown_polygons.rda ├── field.rda ├── submission.rda └── submission_polygons.rda ├── inst ├── .DS_Store └── extdata │ ├── .DS_Store │ └── .gitkeep ├── man ├── IoU.Rd ├── PR.Rd ├── assign_trees.Rd ├── boxes_to_spatial_polygons.Rd ├── calc_jaccard.Rd ├── canopy_model.Rd ├── check_download.Rd ├── compute_precision_recall.Rd ├── crown_polygons.Rd ├── download.Rd ├── evaluate_field_crowns.Rd ├── evaluate_field_stems.Rd ├── evaluate_image_crowns.Rd ├── extract_coordinates.Rd ├── field.Rd ├── field_crowns.Rd ├── get_data.Rd ├── grand_summary.Rd ├── image_crowns.Rd ├── list_annotations.Rd ├── list_chm.Rd ├── list_field_crowns.Rd ├── list_field_stems.Rd ├── list_rgb.Rd ├── load_field_crown.Rd ├── load_ground_truth.Rd ├── polygon_overlap.Rd ├── polygon_overlap_all.Rd ├── project.Rd ├── readTreeXML.Rd ├── site_summary.Rd ├── submission.Rd ├── xml_parse.Rd └── zenodo_url.Rd ├── tests ├── testthat.R └── testthat │ ├── Rplots.pdf │ ├── test_IoU.R │ ├── test_boxes_to_polygons.R │ ├── test_count_trees.R │ ├── test_evaluate_field_crowns.R │ ├── test_evaluate_field_stems.R │ ├── test_evaluate_image_crowns.R │ ├── test_get_data.R │ ├── test_list_field_crowns.R │ ├── test_load_field_crown.R │ ├── test_load_ground_truth.R │ ├── test_sf_to_spatial_polygons.R │ ├── test_stem_plot.R │ └── test_xml_parse.R ├── vignettes ├── Data.Rmd └── evaluation.Rmd └── www ├── .DS_Store ├── Hyperspec_example.png ├── MLBS_3band.png ├── README-unnamed-chunk-10-1.png ├── README-unnamed-chunk-11-1.png ├── README-unnamed-chunk-4-1.png ├── README-unnamed-chunk-5-1.png ├── README-unnamed-chunk-6-1.png ├── README-unnamed-chunk-7-1.png ├── README-unnamed-chunk-8-1.png ├── README-unnamed-chunk-9-1.png ├── RGB_annotations.png ├── RGB_samples.png ├── SJER_005.jpeg ├── SJER_005_laz.png ├── TEAK_Hyperspectral_download.png ├── TEAK_training_hyperspectral.png ├── lidar_annotation_example.png ├── lidar_hand_annotations.png ├── rectlabel.png └── rgb_samples.svg /.Rbuildignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/.Rbuildignore -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/.gitignore -------------------------------------------------------------------------------- /.travis.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/.travis.yml -------------------------------------------------------------------------------- /DESCRIPTION: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/DESCRIPTION -------------------------------------------------------------------------------- /NAMESPACE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/NAMESPACE -------------------------------------------------------------------------------- /NeonTreeEvaluation.Rproj: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/NeonTreeEvaluation.Rproj -------------------------------------------------------------------------------- /R/IoU.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/R/IoU.R -------------------------------------------------------------------------------- /R/OSBS.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/R/OSBS.R -------------------------------------------------------------------------------- /R/PR.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/R/PR.R -------------------------------------------------------------------------------- /R/assign_trees.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/R/assign_trees.R -------------------------------------------------------------------------------- /R/boxes_to_spatial_polygons.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/R/boxes_to_spatial_polygons.R -------------------------------------------------------------------------------- /R/calc_jaccard.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/R/calc_jaccard.R -------------------------------------------------------------------------------- /R/canopy_model.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/R/canopy_model.R -------------------------------------------------------------------------------- /R/check_download.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/R/check_download.R -------------------------------------------------------------------------------- /R/compute_precision_recall.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/R/compute_precision_recall.R -------------------------------------------------------------------------------- /R/count_trees.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/R/count_trees.R -------------------------------------------------------------------------------- /R/crown_polygons.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/R/crown_polygons.R -------------------------------------------------------------------------------- /R/download.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/R/download.R -------------------------------------------------------------------------------- /R/evaluate_field_crowns.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/R/evaluate_field_crowns.R -------------------------------------------------------------------------------- /R/evaluate_field_stems.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/R/evaluate_field_stems.R -------------------------------------------------------------------------------- /R/evaluate_image_crowns.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/R/evaluate_image_crowns.R -------------------------------------------------------------------------------- /R/evaluate_plot.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/R/evaluate_plot.R -------------------------------------------------------------------------------- /R/extract_coordinates.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/R/extract_coordinates.R -------------------------------------------------------------------------------- /R/field.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/R/field.R -------------------------------------------------------------------------------- /R/field_crowns.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/R/field_crowns.R -------------------------------------------------------------------------------- /R/get_data.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/R/get_data.R -------------------------------------------------------------------------------- /R/image_crowns.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/R/image_crowns.R -------------------------------------------------------------------------------- /R/list_annotations.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/R/list_annotations.R -------------------------------------------------------------------------------- /R/list_chm.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/R/list_chm.R -------------------------------------------------------------------------------- /R/list_field_crowns.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/R/list_field_crowns.R -------------------------------------------------------------------------------- /R/list_field_stems.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/R/list_field_stems.R -------------------------------------------------------------------------------- /R/list_rgb.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/R/list_rgb.R -------------------------------------------------------------------------------- /R/load_field_crown.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/R/load_field_crown.R -------------------------------------------------------------------------------- /R/load_ground_truth.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/R/load_ground_truth.R -------------------------------------------------------------------------------- /R/polygon_overlap.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/R/polygon_overlap.R -------------------------------------------------------------------------------- /R/polygon_overlap_all.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/R/polygon_overlap_all.R -------------------------------------------------------------------------------- /R/project.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/R/project.R -------------------------------------------------------------------------------- /R/readTreeXML.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/R/readTreeXML.R -------------------------------------------------------------------------------- /R/sf_to_spatial_polygons.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/R/sf_to_spatial_polygons.R -------------------------------------------------------------------------------- /R/stem_plot.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/R/stem_plot.R -------------------------------------------------------------------------------- /R/submission.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/R/submission.R -------------------------------------------------------------------------------- /R/summary_statistics.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/R/summary_statistics.R -------------------------------------------------------------------------------- /R/xml_parse.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/R/xml_parse.R -------------------------------------------------------------------------------- /R/zenodo_url.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/R/zenodo_url.R -------------------------------------------------------------------------------- /R/zzz.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/R/zzz.R -------------------------------------------------------------------------------- /README.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/README.Rmd -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/README.md -------------------------------------------------------------------------------- /data/crown_polygons.rda: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/data/crown_polygons.rda -------------------------------------------------------------------------------- /data/field.rda: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/data/field.rda -------------------------------------------------------------------------------- /data/submission.rda: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/data/submission.rda -------------------------------------------------------------------------------- /data/submission_polygons.rda: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/data/submission_polygons.rda -------------------------------------------------------------------------------- /inst/.DS_Store: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/inst/.DS_Store -------------------------------------------------------------------------------- /inst/extdata/.DS_Store: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/inst/extdata/.DS_Store -------------------------------------------------------------------------------- /inst/extdata/.gitkeep: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /man/IoU.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/man/IoU.Rd -------------------------------------------------------------------------------- /man/PR.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/man/PR.Rd -------------------------------------------------------------------------------- /man/assign_trees.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/man/assign_trees.Rd -------------------------------------------------------------------------------- /man/boxes_to_spatial_polygons.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/man/boxes_to_spatial_polygons.Rd -------------------------------------------------------------------------------- /man/calc_jaccard.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/man/calc_jaccard.Rd -------------------------------------------------------------------------------- /man/canopy_model.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/man/canopy_model.Rd -------------------------------------------------------------------------------- /man/check_download.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/man/check_download.Rd -------------------------------------------------------------------------------- /man/compute_precision_recall.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/man/compute_precision_recall.Rd -------------------------------------------------------------------------------- /man/crown_polygons.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/man/crown_polygons.Rd -------------------------------------------------------------------------------- /man/download.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/man/download.Rd -------------------------------------------------------------------------------- /man/evaluate_field_crowns.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/man/evaluate_field_crowns.Rd -------------------------------------------------------------------------------- /man/evaluate_field_stems.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/man/evaluate_field_stems.Rd -------------------------------------------------------------------------------- /man/evaluate_image_crowns.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/man/evaluate_image_crowns.Rd -------------------------------------------------------------------------------- /man/extract_coordinates.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/man/extract_coordinates.Rd -------------------------------------------------------------------------------- /man/field.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/man/field.Rd -------------------------------------------------------------------------------- /man/field_crowns.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/man/field_crowns.Rd -------------------------------------------------------------------------------- /man/get_data.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/man/get_data.Rd -------------------------------------------------------------------------------- /man/grand_summary.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/man/grand_summary.Rd -------------------------------------------------------------------------------- /man/image_crowns.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/man/image_crowns.Rd -------------------------------------------------------------------------------- /man/list_annotations.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/man/list_annotations.Rd -------------------------------------------------------------------------------- /man/list_chm.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/man/list_chm.Rd -------------------------------------------------------------------------------- /man/list_field_crowns.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/man/list_field_crowns.Rd -------------------------------------------------------------------------------- /man/list_field_stems.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/man/list_field_stems.Rd -------------------------------------------------------------------------------- /man/list_rgb.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/man/list_rgb.Rd -------------------------------------------------------------------------------- /man/load_field_crown.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/man/load_field_crown.Rd -------------------------------------------------------------------------------- /man/load_ground_truth.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/man/load_ground_truth.Rd -------------------------------------------------------------------------------- /man/polygon_overlap.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/man/polygon_overlap.Rd -------------------------------------------------------------------------------- /man/polygon_overlap_all.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/man/polygon_overlap_all.Rd -------------------------------------------------------------------------------- /man/project.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/man/project.Rd -------------------------------------------------------------------------------- /man/readTreeXML.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/man/readTreeXML.Rd -------------------------------------------------------------------------------- /man/site_summary.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/man/site_summary.Rd -------------------------------------------------------------------------------- /man/submission.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/man/submission.Rd -------------------------------------------------------------------------------- /man/xml_parse.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/man/xml_parse.Rd -------------------------------------------------------------------------------- /man/zenodo_url.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/man/zenodo_url.Rd -------------------------------------------------------------------------------- /tests/testthat.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/tests/testthat.R -------------------------------------------------------------------------------- /tests/testthat/Rplots.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/tests/testthat/Rplots.pdf -------------------------------------------------------------------------------- /tests/testthat/test_IoU.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/tests/testthat/test_IoU.R -------------------------------------------------------------------------------- /tests/testthat/test_boxes_to_polygons.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/tests/testthat/test_boxes_to_polygons.R -------------------------------------------------------------------------------- /tests/testthat/test_count_trees.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/tests/testthat/test_count_trees.R -------------------------------------------------------------------------------- /tests/testthat/test_evaluate_field_crowns.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/tests/testthat/test_evaluate_field_crowns.R -------------------------------------------------------------------------------- /tests/testthat/test_evaluate_field_stems.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/tests/testthat/test_evaluate_field_stems.R -------------------------------------------------------------------------------- /tests/testthat/test_evaluate_image_crowns.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/tests/testthat/test_evaluate_image_crowns.R -------------------------------------------------------------------------------- /tests/testthat/test_get_data.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/tests/testthat/test_get_data.R -------------------------------------------------------------------------------- /tests/testthat/test_list_field_crowns.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/tests/testthat/test_list_field_crowns.R -------------------------------------------------------------------------------- /tests/testthat/test_load_field_crown.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/tests/testthat/test_load_field_crown.R -------------------------------------------------------------------------------- /tests/testthat/test_load_ground_truth.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/tests/testthat/test_load_ground_truth.R -------------------------------------------------------------------------------- /tests/testthat/test_sf_to_spatial_polygons.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/tests/testthat/test_sf_to_spatial_polygons.R -------------------------------------------------------------------------------- /tests/testthat/test_stem_plot.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/tests/testthat/test_stem_plot.R -------------------------------------------------------------------------------- /tests/testthat/test_xml_parse.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/tests/testthat/test_xml_parse.R -------------------------------------------------------------------------------- /vignettes/Data.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/vignettes/Data.Rmd -------------------------------------------------------------------------------- /vignettes/evaluation.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/vignettes/evaluation.Rmd -------------------------------------------------------------------------------- /www/.DS_Store: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/www/.DS_Store -------------------------------------------------------------------------------- /www/Hyperspec_example.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/www/Hyperspec_example.png -------------------------------------------------------------------------------- /www/MLBS_3band.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/www/MLBS_3band.png -------------------------------------------------------------------------------- /www/README-unnamed-chunk-10-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/www/README-unnamed-chunk-10-1.png -------------------------------------------------------------------------------- /www/README-unnamed-chunk-11-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/www/README-unnamed-chunk-11-1.png -------------------------------------------------------------------------------- /www/README-unnamed-chunk-4-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/www/README-unnamed-chunk-4-1.png -------------------------------------------------------------------------------- /www/README-unnamed-chunk-5-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/www/README-unnamed-chunk-5-1.png -------------------------------------------------------------------------------- /www/README-unnamed-chunk-6-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/www/README-unnamed-chunk-6-1.png -------------------------------------------------------------------------------- /www/README-unnamed-chunk-7-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/www/README-unnamed-chunk-7-1.png -------------------------------------------------------------------------------- /www/README-unnamed-chunk-8-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/www/README-unnamed-chunk-8-1.png -------------------------------------------------------------------------------- /www/README-unnamed-chunk-9-1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/www/README-unnamed-chunk-9-1.png -------------------------------------------------------------------------------- /www/RGB_annotations.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/www/RGB_annotations.png -------------------------------------------------------------------------------- /www/RGB_samples.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/www/RGB_samples.png -------------------------------------------------------------------------------- /www/SJER_005.jpeg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/www/SJER_005.jpeg -------------------------------------------------------------------------------- /www/SJER_005_laz.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/www/SJER_005_laz.png -------------------------------------------------------------------------------- /www/TEAK_Hyperspectral_download.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/www/TEAK_Hyperspectral_download.png -------------------------------------------------------------------------------- /www/TEAK_training_hyperspectral.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/www/TEAK_training_hyperspectral.png -------------------------------------------------------------------------------- /www/lidar_annotation_example.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/www/lidar_annotation_example.png -------------------------------------------------------------------------------- /www/lidar_hand_annotations.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/www/lidar_hand_annotations.png -------------------------------------------------------------------------------- /www/rectlabel.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/www/rectlabel.png -------------------------------------------------------------------------------- /www/rgb_samples.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weecology/NeonTreeEvaluation_package/HEAD/www/rgb_samples.svg --------------------------------------------------------------------------------