├── LICENSE ├── README.md ├── data-mimic3 └── root │ └── T0 │ ├── test_starttime.pkl │ └── train_starttime.pkl ├── mmtransformer ├── config.py ├── icd9_reader.py ├── models │ ├── Analysis │ │ ├── bert_analysis_pred_all2.pkl │ │ ├── filter_pred_tokenlist_top10_l0_2.png │ │ ├── filter_pred_tokenlist_top10_l0_2.txt │ │ └── incorrect.png │ ├── IHM_mmtransformer.py │ ├── Models.py │ ├── mbert.py │ ├── notes_analysis.py │ ├── notes_analysis3.py │ ├── text_utils.py │ └── utils.py └── scripts │ ├── extract_T0.py │ ├── extract_notes.py │ └── process_data.py └── requirements.txt /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weimin17/Multimodal_Transformer/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weimin17/Multimodal_Transformer/HEAD/README.md -------------------------------------------------------------------------------- /data-mimic3/root/T0/test_starttime.pkl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weimin17/Multimodal_Transformer/HEAD/data-mimic3/root/T0/test_starttime.pkl -------------------------------------------------------------------------------- /data-mimic3/root/T0/train_starttime.pkl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weimin17/Multimodal_Transformer/HEAD/data-mimic3/root/T0/train_starttime.pkl -------------------------------------------------------------------------------- /mmtransformer/config.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weimin17/Multimodal_Transformer/HEAD/mmtransformer/config.py -------------------------------------------------------------------------------- /mmtransformer/icd9_reader.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weimin17/Multimodal_Transformer/HEAD/mmtransformer/icd9_reader.py -------------------------------------------------------------------------------- /mmtransformer/models/Analysis/bert_analysis_pred_all2.pkl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weimin17/Multimodal_Transformer/HEAD/mmtransformer/models/Analysis/bert_analysis_pred_all2.pkl -------------------------------------------------------------------------------- /mmtransformer/models/Analysis/filter_pred_tokenlist_top10_l0_2.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weimin17/Multimodal_Transformer/HEAD/mmtransformer/models/Analysis/filter_pred_tokenlist_top10_l0_2.png -------------------------------------------------------------------------------- /mmtransformer/models/Analysis/filter_pred_tokenlist_top10_l0_2.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weimin17/Multimodal_Transformer/HEAD/mmtransformer/models/Analysis/filter_pred_tokenlist_top10_l0_2.txt -------------------------------------------------------------------------------- /mmtransformer/models/Analysis/incorrect.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weimin17/Multimodal_Transformer/HEAD/mmtransformer/models/Analysis/incorrect.png -------------------------------------------------------------------------------- /mmtransformer/models/IHM_mmtransformer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weimin17/Multimodal_Transformer/HEAD/mmtransformer/models/IHM_mmtransformer.py -------------------------------------------------------------------------------- /mmtransformer/models/Models.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weimin17/Multimodal_Transformer/HEAD/mmtransformer/models/Models.py -------------------------------------------------------------------------------- /mmtransformer/models/mbert.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weimin17/Multimodal_Transformer/HEAD/mmtransformer/models/mbert.py -------------------------------------------------------------------------------- /mmtransformer/models/notes_analysis.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weimin17/Multimodal_Transformer/HEAD/mmtransformer/models/notes_analysis.py -------------------------------------------------------------------------------- /mmtransformer/models/notes_analysis3.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weimin17/Multimodal_Transformer/HEAD/mmtransformer/models/notes_analysis3.py -------------------------------------------------------------------------------- /mmtransformer/models/text_utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weimin17/Multimodal_Transformer/HEAD/mmtransformer/models/text_utils.py -------------------------------------------------------------------------------- /mmtransformer/models/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weimin17/Multimodal_Transformer/HEAD/mmtransformer/models/utils.py -------------------------------------------------------------------------------- /mmtransformer/scripts/extract_T0.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weimin17/Multimodal_Transformer/HEAD/mmtransformer/scripts/extract_T0.py -------------------------------------------------------------------------------- /mmtransformer/scripts/extract_notes.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weimin17/Multimodal_Transformer/HEAD/mmtransformer/scripts/extract_notes.py -------------------------------------------------------------------------------- /mmtransformer/scripts/process_data.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weimin17/Multimodal_Transformer/HEAD/mmtransformer/scripts/process_data.py -------------------------------------------------------------------------------- /requirements.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/weimin17/Multimodal_Transformer/HEAD/requirements.txt --------------------------------------------------------------------------------