├── .DS_Store ├── .gitignore ├── Docs ├── .DS_Store ├── Get_trained_sites.pl ├── S.pombe_model.h5 └── Trained_motifs_v1.0.txt ├── Getting_Started ├── .DS_Store ├── .bed.tmp ├── .fast5Index.tmp ├── .reads.tmp ├── 1.Reads_extract.sh ├── 2.feature_extract.py ├── DeepEdit.py ├── DeepEdit_result.txt ├── EditingRatioCal.pl ├── Editing_ratio.txt ├── GCF_000002945.1_ASM294v2_rna.fna ├── NanoReads_status.pl ├── NanoReads_status.txt ├── S.pombe_model.h5 ├── nanopore.fastq ├── nanopore.sam ├── nanopore_reads │ ├── 002318da-7f02-4631-b5a8-079aa4e5ad27.fast5 │ ├── 00255678-5728-436b-9169-e3a5df61adf3.fast5 │ ├── 002a6d29-0ca7-444d-bfe8-23bdb44532a8.fast5 │ ├── 0043276d-603f-4e6c-8daa-d17bf3eca198.fast5 │ ├── 005edf21-4c35-41eb-8091-3651b7e9aac6.fast5 │ ├── 006767f2-b55a-4d38-abc4-9d59bb4a2a52.fast5 │ ├── 0079c9bf-5ed5-4999-abcb-6da19e3568fc.fast5 │ ├── 00ab6220-390d-4c47-af8c-b7734c49fe1c.fast5 │ ├── 00ad9e58-f2f8-45cf-889e-d1236ce70038.fast5 │ ├── 00b2ea41-281e-4c04-bf77-1d5ff6ec7bfa.fast5 │ ├── 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