├── .dockerignore ├── .github ├── ISSUE_TEMPLATE │ ├── bug_report.md │ ├── enhancement_proposal.md │ └── question.md └── pull_request_template.md ├── .gitignore ├── CONTRIBUTING.md ├── LICENSE ├── Makefile ├── README.md ├── __attic__ ├── docs │ ├── README.md │ ├── design │ │ ├── 00_Header.jpg │ │ ├── 1.1_Colour_.jpg │ │ ├── 1.2_Typography.jpg │ │ ├── 1.3_Header.jpg │ │ ├── 1.4_Footer.jpg │ │ ├── 1.5_Breadcrumbs_2_levels_.jpg │ │ ├── 1.5_Breadcrumbs_3_levels_.jpg │ │ ├── 1.6_CTA_Links_.jpg │ │ ├── 1.7_Search.jpg │ │ ├── 1.8_Tables.jpg │ │ ├── design-system.md │ │ ├── mockups.md │ │ ├── s_80E0FAE63D8FEACBC2D84BC148149813EA5AB8AA2E1FDA99090E7199EBBFE5D9_1556632095254_00_Header2x.jpg │ │ ├── s_80E0FAE63D8FEACBC2D84BC148149813EA5AB8AA2E1FDA99090E7199EBBFE5D9_1556633077597_1.2_Typography.jpg │ │ ├── s_80E0FAE63D8FEACBC2D84BC148149813EA5AB8AA2E1FDA99090E7199EBBFE5D9_1556639329062_1.1_Colour+palletex2.jpg │ │ ├── s_80E0FAE63D8FEACBC2D84BC148149813EA5AB8AA2E1FDA99090E7199EBBFE5D9_1556641211609_1.7_Search.jpg │ │ ├── s_80E0FAE63D8FEACBC2D84BC148149813EA5AB8AA2E1FDA99090E7199EBBFE5D9_1556641251273_1.5_Breadcrumbs_3+levels.jpg │ │ ├── s_80E0FAE63D8FEACBC2D84BC148149813EA5AB8AA2E1FDA99090E7199EBBFE5D9_1556641260288_1.5_Breadcrumbs_2+levels.jpg │ │ ├── s_80E0FAE63D8FEACBC2D84BC148149813EA5AB8AA2E1FDA99090E7199EBBFE5D9_1556641267412_1.4_Footer.jpg │ │ ├── s_80E0FAE63D8FEACBC2D84BC148149813EA5AB8AA2E1FDA99090E7199EBBFE5D9_1556641277300_1.3_Header.jpg │ │ ├── s_80E0FAE63D8FEACBC2D84BC148149813EA5AB8AA2E1FDA99090E7199EBBFE5D9_1556642898755_1.6_Buttons.jpg │ │ └── s_80E0FAE63D8FEACBC2D84BC148149813EA5AB8AA2E1FDA99090E7199EBBFE5D9_1556805892800_1.8_Tables.jpg │ ├── problems.md │ └── s3-layout.md └── pipeline │ └── reach-evaluator │ ├── Dockerfile │ ├── evaluator_task.py │ └── requirements.txt ├── argo ├── 00-namespace.yaml ├── README.md ├── argo.yaml ├── elasticsearch.yaml ├── postgres.yaml ├── psqlinit.yaml ├── reach-msf.yaml ├── reach-populate-pg.yaml └── secrets │ ├── minikube │ └── argo │ │ └── aws │ │ └── .gitkeep │ └── sync_secrets.py ├── base ├── Dockerfile ├── elastic │ ├── __init__.py │ ├── common.py │ ├── count.py │ ├── epmc_metadata.py │ ├── fulltext_docs.py │ ├── fuzzy_matched_citations.py │ ├── import_refs_from_s3.py │ └── import_sections_from_s3.py ├── hooks │ ├── s3hook.py │ └── sentry.py ├── requirements.txt ├── safe_import.py └── tests │ ├── common.py │ ├── mock_sites │ ├── gov │ │ ├── 1.html │ │ ├── 2.html │ │ └── 3.html │ ├── msf │ │ └── 1.html │ ├── nice │ │ ├── 1.html │ │ └── 2.html │ ├── parliament │ │ ├── 1.html │ │ └── 2.html │ ├── unicef │ │ ├── 1.html │ │ └── 2.html │ └── who │ │ ├── 1.html │ │ └── 2.html │ ├── pdfs │ ├── test_pdf.pdf │ ├── test_pdf_multipage.pdf │ └── test_pdf_page_number.pdf │ └── xml │ └── test_xml.xml ├── docker-compose.yaml ├── docs ├── antora.yml └── modules │ └── ROOT │ ├── nav.adoc │ └── pages │ └── index.adoc ├── export_wellcome_env.py ├── pipeline ├── reach-es-extractor │ ├── Dockerfile │ ├── Dockerfile.test │ ├── extract_refs_task.py │ ├── refparse │ │ ├── README.md │ │ ├── __init__.py │ │ ├── algo_evaluation │ │ │ ├── compare_found_sections.py │ │ │ ├── data_evaluate │ │ │ │ └── .gitkeep │ │ │ ├── evaluate_find_section.py │ │ │ ├── evaluate_match_references.py │ │ │ ├── evaluate_parse.py │ │ │ ├── evaluate_settings.py │ │ │ ├── evaluate_split_section.py │ │ │ ├── evaluation.md │ │ │ ├── exploratory │ │ │ │ ├── investigate_match_thresholds.py │ │ │ │ ├── negative_cosines_hist_2019-07-01-1211.png │ │ │ │ ├── negative_cosines_len_scatter_2019-07-01-1211.png │ │ │ │ ├── thresholds_F1Score_negative_heatmap_2019-07-01-1211.png │ │ │ │ ├── thresholds_Precision_negative_heatmap_2019-07-01-1211.png │ │ │ │ ├── thresholds_Recall_negative_heatmap_2019-07-01-1211.png │ │ │ │ └── title_lengths_2019-07-01-1211.png │ │ │ └── results │ │ │ │ └── .gitkeep │ │ ├── evaluate_algo.py │ │ ├── merge_results.py │ │ ├── parse_latest.py │ │ ├── reference_parser_models │ │ │ └── reference_parser_pipeline.pkl │ │ ├── refparse.py │ │ ├── settings.py │ │ ├── tests │ │ │ ├── __init__.py │ │ │ ├── test_config_multitask.ini │ │ │ ├── test_exact_match.py │ │ │ ├── test_fuzzy_match.py │ │ │ └── test_split_parse.py │ │ └── utils │ │ │ ├── __init__.py │ │ │ ├── exact_match.py │ │ │ ├── file_manager.py │ │ │ ├── fuzzy_match.py │ │ │ ├── parse.py │ │ │ ├── s3.py │ │ │ └── serialiser.py │ └── requirements.txt ├── reach-es-indexer │ ├── Dockerfile │ ├── index_task.py │ └── requirements.txt ├── reach-fuzzy-matcher │ ├── Dockerfile │ ├── fuzzymatcher_task.py │ └── requirements.txt ├── reach-parser │ ├── Dockerfile │ ├── Dockerfile.test │ ├── __init__.py │ ├── normalizer │ │ ├── __init__.py │ │ └── title_normalizer.py │ ├── parser_task.py │ ├── pdf_parser │ │ ├── __init__.py │ │ ├── main.py │ │ ├── objects │ │ │ ├── PdfObjects.py │ │ │ └── __init__.py │ │ ├── pdf_parse.py │ │ ├── resources │ │ │ ├── keywords.txt │ │ │ └── section_keywords.txt │ │ ├── tests │ │ │ ├── __init__.py │ │ │ ├── test_pdf_objects.py │ │ │ └── test_pdf_parser_tools.py │ │ └── tools │ │ │ ├── __init__.py │ │ │ ├── dbTools.py │ │ │ └── extraction.py │ └── requirements.txt └── reach-scraper │ ├── Dockerfile │ ├── Dockerfile.test │ ├── README.md │ ├── __init__.py │ ├── docker-compose.yaml │ ├── pg_exists.py │ ├── pg_isready.py │ ├── requirements.txt │ ├── scrapy.cfg │ ├── spider_task.py │ └── wsf_scraping │ ├── __init__.py │ ├── contracts.py │ ├── feed_storage.py │ ├── filter.py │ ├── items.py │ ├── middlewares.py │ ├── pipelines.py │ ├── settings.py │ ├── spiders │ ├── __init__.py │ ├── acme_spider.py │ ├── base_spider.py │ ├── gov_spider.py │ ├── msf_spider.py │ ├── nice_spider.py │ ├── parliament_spider.py │ ├── unicef_spider.py │ └── who_iris_spider.py │ └── tests │ ├── __init__.py │ ├── test_gov_spider.py │ ├── test_msf_spider.py │ ├── test_nice_spider.py │ ├── test_parliament_spider.py │ ├── test_scraper_spiders.py │ ├── test_unicef_spider.py │ └── test_who_spider.py ├── requirements.txt ├── test_target ├── README.md ├── inner_page.html ├── page.html └── target_server.py └── web ├── .babelrc ├── .dockerignore ├── .eslintrc.json ├── Dockerfile ├── Makefile ├── bin └── update_vendor.sh ├── config ├── docker.config.toml └── local.config.toml ├── package-lock.json ├── package.json ├── requirements.txt ├── setup.py └── web ├── __init__.py ├── api.py ├── config.py ├── db.py ├── docs ├── .gitignore ├── Makefile ├── README.md ├── build │ ├── doctrees │ │ ├── api.doctree │ │ ├── environment.pickle │ │ ├── index.doctree │ │ └── intro.doctree │ └── html │ │ ├── .buildinfo │ │ ├── _static │ │ ├── basic.css │ │ ├── css │ │ │ ├── badge_only.css │ │ │ └── theme.css │ │ ├── doctools.js │ │ ├── documentation_options.js │ │ ├── file.png │ │ ├── fonts │ │ │ ├── Inconsolata-Bold.ttf │ │ │ ├── Inconsolata-Regular.ttf │ │ │ ├── Inconsolata.ttf │ │ │ ├── Lato-Bold.ttf │ │ │ ├── Lato-Regular.ttf │ │ │ ├── Lato │ │ │ │ ├── lato-bold.eot │ │ │ │ ├── lato-bold.ttf │ │ │ │ ├── lato-bold.woff │ │ │ │ ├── lato-bold.woff2 │ │ │ │ ├── lato-bolditalic.eot │ │ │ │ ├── lato-bolditalic.ttf │ │ │ │ ├── lato-bolditalic.woff │ │ │ │ ├── lato-bolditalic.woff2 │ │ │ │ ├── lato-italic.eot │ │ │ │ ├── lato-italic.ttf │ │ │ │ ├── lato-italic.woff │ │ │ │ ├── lato-italic.woff2 │ │ │ │ ├── lato-regular.eot │ │ │ │ ├── lato-regular.ttf │ │ │ │ ├── lato-regular.woff │ │ │ │ └── lato-regular.woff2 │ │ │ ├── RobotoSlab-Bold.ttf │ │ │ ├── RobotoSlab-Regular.ttf │ │ │ ├── RobotoSlab │ │ │ │ ├── roboto-slab-v7-bold.eot │ │ │ │ ├── roboto-slab-v7-bold.ttf │ │ │ │ ├── roboto-slab-v7-bold.woff │ │ │ │ ├── roboto-slab-v7-bold.woff2 │ │ │ │ ├── roboto-slab-v7-regular.eot │ │ │ │ ├── roboto-slab-v7-regular.ttf │ │ │ │ ├── roboto-slab-v7-regular.woff │ │ │ │ └── roboto-slab-v7-regular.woff2 │ │ │ ├── fontawesome-webfont.eot │ │ │ ├── fontawesome-webfont.svg │ │ │ ├── fontawesome-webfont.ttf │ │ │ ├── fontawesome-webfont.woff │ │ │ └── fontawesome-webfont.woff2 │ │ ├── jquery-3.5.1.js │ │ ├── jquery.js │ │ ├── js │ │ │ ├── modernizr.min.js │ │ │ └── theme.js │ │ ├── language_data.js │ │ ├── minus.png │ │ ├── plus.png │ │ ├── pygments.css │ │ ├── searchtools.js │ │ ├── underscore-1.3.1.js │ │ └── underscore.js │ │ ├── api.html │ │ ├── genindex.html │ │ ├── index.html │ │ ├── intro.html │ │ ├── objects.inv │ │ ├── search.html │ │ └── searchindex.js ├── make.bat ├── requirements.txt └── source │ ├── api.md │ ├── conf.py │ ├── index.rst │ └── intro.md ├── src ├── css │ ├── about.less │ ├── contact.less │ ├── footer.less │ ├── header.less │ ├── home.less │ ├── icons.less │ ├── results.less │ ├── search.less │ ├── style.less │ ├── variables.less │ └── wellcome-bold-webfont.woff2 ├── favicon │ ├── android-icon-144x144.png │ ├── android-icon-192x192.png │ ├── android-icon-36x36.png │ ├── android-icon-48x48.png │ ├── android-icon-72x72.png │ ├── android-icon-96x96.png │ ├── apple-icon-114x114.png │ ├── apple-icon-120x120.png │ ├── apple-icon-144x144.png │ ├── apple-icon-152x152.png │ ├── apple-icon-180x180.png │ ├── apple-icon-57x57.png │ ├── apple-icon-60x60.png │ ├── apple-icon-72x72.png │ ├── apple-icon-76x76.png │ ├── apple-icon-precomposed.png │ ├── apple-icon.png │ ├── browserconfig.xml │ ├── favicon-16x16.png │ ├── favicon-32x32.png │ ├── favicon-96x96.png │ ├── favicon.ico │ ├── manifest.json │ ├── ms-icon-144x144.png │ ├── ms-icon-150x150.png │ ├── ms-icon-310x310.png │ └── ms-icon-70x70.png ├── images │ ├── Icon_ New-window.svg │ ├── Icon_About_Accuracy_100px.svg │ ├── Icon_About_Open-source_100px.svg │ ├── Icon_About_Transparent_100px.svg │ ├── Icon_Arrow_down.svg │ ├── Icon_Chevron_Double.svg │ ├── Icon_Chevron_Down.svg │ ├── Icon_Download_16px.svg │ ├── Icon_How_Download_160px.svg │ ├── Icon_How_Extract_160px.svg │ ├── Icon_How_Match_160px.svg │ ├── Icon_Info.svg │ ├── Icon_Menu_16px.svg │ ├── Icon_Policy_24px.svg │ ├── Icon_Research_24px.svg │ ├── Icon_Scroll-arow.svg │ ├── Icon_Search_16px.svg │ ├── Icon_Sort-by_16px.svg │ ├── Icon_new_window.svg │ ├── Illustration_Glass.svg │ ├── Illustration_Papers.svg │ ├── Image_Product-shot.png │ ├── Shape_01.svg │ ├── Shape_02.svg │ ├── Wellcome_logo.svg │ ├── reach_alpha_branding.svg │ ├── reach_site_view.png │ ├── wave.svg │ ├── wellcome-logo.svg │ └── white-wave.svg ├── js │ ├── app.js │ ├── citationsTable.js │ ├── clearSearch.js │ ├── home.js │ ├── policyTable.js │ ├── resultsCommon.js │ ├── templates │ │ └── no_results.js │ └── v.contact.js ├── vendor │ └── spectre-0.5.8 │ │ ├── spectre-exp.css │ │ ├── spectre-exp.min.css │ │ ├── spectre-icons.css │ │ ├── spectre-icons.min.css │ │ ├── spectre.css │ │ └── spectre.min.css └── w-avatar-pitch-1.svg ├── templates ├── about.html ├── base.html ├── contact.html ├── how-it-works.html ├── index.html ├── privacy.html ├── results │ ├── citations.html │ └── policy-docs.html └── search │ ├── citations.html │ └── policy-docs.html ├── tests ├── test_search_api.py └── test_template.py ├── utils.py ├── views ├── __init__.py ├── api │ ├── __init__.py │ ├── api_search_citations.py │ ├── api_search_policies.py │ └── utils.py ├── apidocs.py ├── contact.py ├── opt_search.py ├── robotstxt.py ├── search │ ├── __init__.py │ ├── citations.py │ ├── export_citations.py │ ├── export_policies.py │ └── policies.py ├── search_exports.py └── template.py └── wsgi.py /.dockerignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/.dockerignore -------------------------------------------------------------------------------- /.github/ISSUE_TEMPLATE/bug_report.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/.github/ISSUE_TEMPLATE/bug_report.md -------------------------------------------------------------------------------- /.github/ISSUE_TEMPLATE/enhancement_proposal.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/.github/ISSUE_TEMPLATE/enhancement_proposal.md -------------------------------------------------------------------------------- /.github/ISSUE_TEMPLATE/question.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/.github/ISSUE_TEMPLATE/question.md -------------------------------------------------------------------------------- /.github/pull_request_template.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/.github/pull_request_template.md -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/.gitignore -------------------------------------------------------------------------------- /CONTRIBUTING.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/CONTRIBUTING.md -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/LICENSE -------------------------------------------------------------------------------- /Makefile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/Makefile -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/README.md -------------------------------------------------------------------------------- /__attic__/docs/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/__attic__/docs/README.md -------------------------------------------------------------------------------- /__attic__/docs/design/00_Header.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/__attic__/docs/design/00_Header.jpg -------------------------------------------------------------------------------- /__attic__/docs/design/1.1_Colour_.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/__attic__/docs/design/1.1_Colour_.jpg -------------------------------------------------------------------------------- /__attic__/docs/design/1.2_Typography.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/__attic__/docs/design/1.2_Typography.jpg -------------------------------------------------------------------------------- /__attic__/docs/design/1.3_Header.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/__attic__/docs/design/1.3_Header.jpg -------------------------------------------------------------------------------- /__attic__/docs/design/1.4_Footer.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/__attic__/docs/design/1.4_Footer.jpg -------------------------------------------------------------------------------- /__attic__/docs/design/1.5_Breadcrumbs_2_levels_.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/__attic__/docs/design/1.5_Breadcrumbs_2_levels_.jpg -------------------------------------------------------------------------------- /__attic__/docs/design/1.5_Breadcrumbs_3_levels_.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/__attic__/docs/design/1.5_Breadcrumbs_3_levels_.jpg -------------------------------------------------------------------------------- /__attic__/docs/design/1.6_CTA_Links_.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/__attic__/docs/design/1.6_CTA_Links_.jpg -------------------------------------------------------------------------------- /__attic__/docs/design/1.7_Search.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/__attic__/docs/design/1.7_Search.jpg -------------------------------------------------------------------------------- /__attic__/docs/design/1.8_Tables.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/__attic__/docs/design/1.8_Tables.jpg -------------------------------------------------------------------------------- /__attic__/docs/design/design-system.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/__attic__/docs/design/design-system.md -------------------------------------------------------------------------------- /__attic__/docs/design/mockups.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/__attic__/docs/design/mockups.md -------------------------------------------------------------------------------- /__attic__/docs/design/s_80E0FAE63D8FEACBC2D84BC148149813EA5AB8AA2E1FDA99090E7199EBBFE5D9_1556632095254_00_Header2x.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/__attic__/docs/design/s_80E0FAE63D8FEACBC2D84BC148149813EA5AB8AA2E1FDA99090E7199EBBFE5D9_1556632095254_00_Header2x.jpg -------------------------------------------------------------------------------- /__attic__/docs/design/s_80E0FAE63D8FEACBC2D84BC148149813EA5AB8AA2E1FDA99090E7199EBBFE5D9_1556633077597_1.2_Typography.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/__attic__/docs/design/s_80E0FAE63D8FEACBC2D84BC148149813EA5AB8AA2E1FDA99090E7199EBBFE5D9_1556633077597_1.2_Typography.jpg -------------------------------------------------------------------------------- /__attic__/docs/design/s_80E0FAE63D8FEACBC2D84BC148149813EA5AB8AA2E1FDA99090E7199EBBFE5D9_1556639329062_1.1_Colour+palletex2.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/__attic__/docs/design/s_80E0FAE63D8FEACBC2D84BC148149813EA5AB8AA2E1FDA99090E7199EBBFE5D9_1556639329062_1.1_Colour+palletex2.jpg -------------------------------------------------------------------------------- /__attic__/docs/design/s_80E0FAE63D8FEACBC2D84BC148149813EA5AB8AA2E1FDA99090E7199EBBFE5D9_1556641211609_1.7_Search.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/__attic__/docs/design/s_80E0FAE63D8FEACBC2D84BC148149813EA5AB8AA2E1FDA99090E7199EBBFE5D9_1556641211609_1.7_Search.jpg -------------------------------------------------------------------------------- /__attic__/docs/design/s_80E0FAE63D8FEACBC2D84BC148149813EA5AB8AA2E1FDA99090E7199EBBFE5D9_1556641251273_1.5_Breadcrumbs_3+levels.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/__attic__/docs/design/s_80E0FAE63D8FEACBC2D84BC148149813EA5AB8AA2E1FDA99090E7199EBBFE5D9_1556641251273_1.5_Breadcrumbs_3+levels.jpg -------------------------------------------------------------------------------- /__attic__/docs/design/s_80E0FAE63D8FEACBC2D84BC148149813EA5AB8AA2E1FDA99090E7199EBBFE5D9_1556641260288_1.5_Breadcrumbs_2+levels.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/__attic__/docs/design/s_80E0FAE63D8FEACBC2D84BC148149813EA5AB8AA2E1FDA99090E7199EBBFE5D9_1556641260288_1.5_Breadcrumbs_2+levels.jpg -------------------------------------------------------------------------------- /__attic__/docs/design/s_80E0FAE63D8FEACBC2D84BC148149813EA5AB8AA2E1FDA99090E7199EBBFE5D9_1556641267412_1.4_Footer.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/__attic__/docs/design/s_80E0FAE63D8FEACBC2D84BC148149813EA5AB8AA2E1FDA99090E7199EBBFE5D9_1556641267412_1.4_Footer.jpg -------------------------------------------------------------------------------- /__attic__/docs/design/s_80E0FAE63D8FEACBC2D84BC148149813EA5AB8AA2E1FDA99090E7199EBBFE5D9_1556641277300_1.3_Header.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/__attic__/docs/design/s_80E0FAE63D8FEACBC2D84BC148149813EA5AB8AA2E1FDA99090E7199EBBFE5D9_1556641277300_1.3_Header.jpg -------------------------------------------------------------------------------- /__attic__/docs/design/s_80E0FAE63D8FEACBC2D84BC148149813EA5AB8AA2E1FDA99090E7199EBBFE5D9_1556642898755_1.6_Buttons.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/__attic__/docs/design/s_80E0FAE63D8FEACBC2D84BC148149813EA5AB8AA2E1FDA99090E7199EBBFE5D9_1556642898755_1.6_Buttons.jpg -------------------------------------------------------------------------------- /__attic__/docs/design/s_80E0FAE63D8FEACBC2D84BC148149813EA5AB8AA2E1FDA99090E7199EBBFE5D9_1556805892800_1.8_Tables.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/__attic__/docs/design/s_80E0FAE63D8FEACBC2D84BC148149813EA5AB8AA2E1FDA99090E7199EBBFE5D9_1556805892800_1.8_Tables.jpg -------------------------------------------------------------------------------- /__attic__/docs/problems.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/__attic__/docs/problems.md -------------------------------------------------------------------------------- /__attic__/docs/s3-layout.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/__attic__/docs/s3-layout.md -------------------------------------------------------------------------------- /__attic__/pipeline/reach-evaluator/Dockerfile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/__attic__/pipeline/reach-evaluator/Dockerfile -------------------------------------------------------------------------------- /__attic__/pipeline/reach-evaluator/evaluator_task.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/__attic__/pipeline/reach-evaluator/evaluator_task.py -------------------------------------------------------------------------------- /__attic__/pipeline/reach-evaluator/requirements.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/__attic__/pipeline/reach-evaluator/requirements.txt -------------------------------------------------------------------------------- /argo/00-namespace.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/argo/00-namespace.yaml -------------------------------------------------------------------------------- /argo/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/argo/README.md -------------------------------------------------------------------------------- /argo/argo.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/argo/argo.yaml -------------------------------------------------------------------------------- /argo/elasticsearch.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/argo/elasticsearch.yaml -------------------------------------------------------------------------------- /argo/postgres.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/argo/postgres.yaml -------------------------------------------------------------------------------- /argo/psqlinit.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/argo/psqlinit.yaml -------------------------------------------------------------------------------- /argo/reach-msf.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/argo/reach-msf.yaml -------------------------------------------------------------------------------- /argo/reach-populate-pg.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/argo/reach-populate-pg.yaml -------------------------------------------------------------------------------- /argo/secrets/minikube/argo/aws/.gitkeep: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /argo/secrets/sync_secrets.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/argo/secrets/sync_secrets.py -------------------------------------------------------------------------------- /base/Dockerfile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/base/Dockerfile -------------------------------------------------------------------------------- /base/elastic/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /base/elastic/common.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/base/elastic/common.py -------------------------------------------------------------------------------- /base/elastic/count.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/base/elastic/count.py -------------------------------------------------------------------------------- /base/elastic/epmc_metadata.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/base/elastic/epmc_metadata.py -------------------------------------------------------------------------------- /base/elastic/fulltext_docs.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/base/elastic/fulltext_docs.py -------------------------------------------------------------------------------- /base/elastic/fuzzy_matched_citations.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/base/elastic/fuzzy_matched_citations.py -------------------------------------------------------------------------------- /base/elastic/import_refs_from_s3.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/base/elastic/import_refs_from_s3.py -------------------------------------------------------------------------------- /base/elastic/import_sections_from_s3.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/base/elastic/import_sections_from_s3.py -------------------------------------------------------------------------------- /base/hooks/s3hook.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/base/hooks/s3hook.py -------------------------------------------------------------------------------- /base/hooks/sentry.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/base/hooks/sentry.py -------------------------------------------------------------------------------- /base/requirements.txt: -------------------------------------------------------------------------------- 1 | boto3 2 | sentry-sdk 3 | elasticsearch 4 | -------------------------------------------------------------------------------- /base/safe_import.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/base/safe_import.py -------------------------------------------------------------------------------- /base/tests/common.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/base/tests/common.py -------------------------------------------------------------------------------- /base/tests/mock_sites/gov/1.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/base/tests/mock_sites/gov/1.html -------------------------------------------------------------------------------- /base/tests/mock_sites/gov/2.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/base/tests/mock_sites/gov/2.html -------------------------------------------------------------------------------- /base/tests/mock_sites/gov/3.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/base/tests/mock_sites/gov/3.html -------------------------------------------------------------------------------- /base/tests/mock_sites/msf/1.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/base/tests/mock_sites/msf/1.html -------------------------------------------------------------------------------- /base/tests/mock_sites/nice/1.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/base/tests/mock_sites/nice/1.html -------------------------------------------------------------------------------- /base/tests/mock_sites/nice/2.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/base/tests/mock_sites/nice/2.html -------------------------------------------------------------------------------- /base/tests/mock_sites/parliament/1.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/base/tests/mock_sites/parliament/1.html -------------------------------------------------------------------------------- /base/tests/mock_sites/parliament/2.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/base/tests/mock_sites/parliament/2.html -------------------------------------------------------------------------------- /base/tests/mock_sites/unicef/1.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/base/tests/mock_sites/unicef/1.html -------------------------------------------------------------------------------- /base/tests/mock_sites/unicef/2.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/base/tests/mock_sites/unicef/2.html -------------------------------------------------------------------------------- /base/tests/mock_sites/who/1.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/base/tests/mock_sites/who/1.html -------------------------------------------------------------------------------- /base/tests/mock_sites/who/2.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/base/tests/mock_sites/who/2.html -------------------------------------------------------------------------------- /base/tests/pdfs/test_pdf.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/base/tests/pdfs/test_pdf.pdf -------------------------------------------------------------------------------- /base/tests/pdfs/test_pdf_multipage.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/base/tests/pdfs/test_pdf_multipage.pdf -------------------------------------------------------------------------------- /base/tests/pdfs/test_pdf_page_number.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/base/tests/pdfs/test_pdf_page_number.pdf -------------------------------------------------------------------------------- /base/tests/xml/test_xml.xml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/base/tests/xml/test_xml.xml -------------------------------------------------------------------------------- /docker-compose.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/docker-compose.yaml -------------------------------------------------------------------------------- /docs/antora.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/docs/antora.yml -------------------------------------------------------------------------------- /docs/modules/ROOT/nav.adoc: -------------------------------------------------------------------------------- 1 | * xref:index.adoc[] 2 | -------------------------------------------------------------------------------- /docs/modules/ROOT/pages/index.adoc: -------------------------------------------------------------------------------- 1 | = Reach 2 | -------------------------------------------------------------------------------- /export_wellcome_env.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/export_wellcome_env.py -------------------------------------------------------------------------------- /pipeline/reach-es-extractor/Dockerfile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-es-extractor/Dockerfile -------------------------------------------------------------------------------- /pipeline/reach-es-extractor/Dockerfile.test: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-es-extractor/Dockerfile.test -------------------------------------------------------------------------------- /pipeline/reach-es-extractor/extract_refs_task.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-es-extractor/extract_refs_task.py -------------------------------------------------------------------------------- /pipeline/reach-es-extractor/refparse/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-es-extractor/refparse/README.md -------------------------------------------------------------------------------- /pipeline/reach-es-extractor/refparse/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /pipeline/reach-es-extractor/refparse/algo_evaluation/compare_found_sections.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-es-extractor/refparse/algo_evaluation/compare_found_sections.py -------------------------------------------------------------------------------- /pipeline/reach-es-extractor/refparse/algo_evaluation/data_evaluate/.gitkeep: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /pipeline/reach-es-extractor/refparse/algo_evaluation/evaluate_find_section.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-es-extractor/refparse/algo_evaluation/evaluate_find_section.py -------------------------------------------------------------------------------- /pipeline/reach-es-extractor/refparse/algo_evaluation/evaluate_match_references.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-es-extractor/refparse/algo_evaluation/evaluate_match_references.py -------------------------------------------------------------------------------- /pipeline/reach-es-extractor/refparse/algo_evaluation/evaluate_parse.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-es-extractor/refparse/algo_evaluation/evaluate_parse.py -------------------------------------------------------------------------------- /pipeline/reach-es-extractor/refparse/algo_evaluation/evaluate_settings.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-es-extractor/refparse/algo_evaluation/evaluate_settings.py -------------------------------------------------------------------------------- /pipeline/reach-es-extractor/refparse/algo_evaluation/evaluate_split_section.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-es-extractor/refparse/algo_evaluation/evaluate_split_section.py -------------------------------------------------------------------------------- /pipeline/reach-es-extractor/refparse/algo_evaluation/evaluation.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-es-extractor/refparse/algo_evaluation/evaluation.md -------------------------------------------------------------------------------- /pipeline/reach-es-extractor/refparse/algo_evaluation/exploratory/investigate_match_thresholds.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-es-extractor/refparse/algo_evaluation/exploratory/investigate_match_thresholds.py -------------------------------------------------------------------------------- /pipeline/reach-es-extractor/refparse/algo_evaluation/exploratory/negative_cosines_hist_2019-07-01-1211.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-es-extractor/refparse/algo_evaluation/exploratory/negative_cosines_hist_2019-07-01-1211.png -------------------------------------------------------------------------------- /pipeline/reach-es-extractor/refparse/algo_evaluation/exploratory/negative_cosines_len_scatter_2019-07-01-1211.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-es-extractor/refparse/algo_evaluation/exploratory/negative_cosines_len_scatter_2019-07-01-1211.png -------------------------------------------------------------------------------- /pipeline/reach-es-extractor/refparse/algo_evaluation/exploratory/thresholds_F1Score_negative_heatmap_2019-07-01-1211.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-es-extractor/refparse/algo_evaluation/exploratory/thresholds_F1Score_negative_heatmap_2019-07-01-1211.png -------------------------------------------------------------------------------- /pipeline/reach-es-extractor/refparse/algo_evaluation/exploratory/thresholds_Precision_negative_heatmap_2019-07-01-1211.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-es-extractor/refparse/algo_evaluation/exploratory/thresholds_Precision_negative_heatmap_2019-07-01-1211.png -------------------------------------------------------------------------------- /pipeline/reach-es-extractor/refparse/algo_evaluation/exploratory/thresholds_Recall_negative_heatmap_2019-07-01-1211.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-es-extractor/refparse/algo_evaluation/exploratory/thresholds_Recall_negative_heatmap_2019-07-01-1211.png -------------------------------------------------------------------------------- /pipeline/reach-es-extractor/refparse/algo_evaluation/exploratory/title_lengths_2019-07-01-1211.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-es-extractor/refparse/algo_evaluation/exploratory/title_lengths_2019-07-01-1211.png -------------------------------------------------------------------------------- /pipeline/reach-es-extractor/refparse/algo_evaluation/results/.gitkeep: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /pipeline/reach-es-extractor/refparse/evaluate_algo.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-es-extractor/refparse/evaluate_algo.py -------------------------------------------------------------------------------- /pipeline/reach-es-extractor/refparse/merge_results.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-es-extractor/refparse/merge_results.py -------------------------------------------------------------------------------- /pipeline/reach-es-extractor/refparse/parse_latest.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-es-extractor/refparse/parse_latest.py -------------------------------------------------------------------------------- /pipeline/reach-es-extractor/refparse/reference_parser_models/reference_parser_pipeline.pkl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-es-extractor/refparse/reference_parser_models/reference_parser_pipeline.pkl -------------------------------------------------------------------------------- /pipeline/reach-es-extractor/refparse/refparse.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-es-extractor/refparse/refparse.py -------------------------------------------------------------------------------- /pipeline/reach-es-extractor/refparse/settings.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-es-extractor/refparse/settings.py -------------------------------------------------------------------------------- /pipeline/reach-es-extractor/refparse/tests/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /pipeline/reach-es-extractor/refparse/tests/test_config_multitask.ini: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-es-extractor/refparse/tests/test_config_multitask.ini -------------------------------------------------------------------------------- /pipeline/reach-es-extractor/refparse/tests/test_exact_match.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-es-extractor/refparse/tests/test_exact_match.py -------------------------------------------------------------------------------- /pipeline/reach-es-extractor/refparse/tests/test_fuzzy_match.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-es-extractor/refparse/tests/test_fuzzy_match.py -------------------------------------------------------------------------------- /pipeline/reach-es-extractor/refparse/tests/test_split_parse.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-es-extractor/refparse/tests/test_split_parse.py -------------------------------------------------------------------------------- /pipeline/reach-es-extractor/refparse/utils/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-es-extractor/refparse/utils/__init__.py -------------------------------------------------------------------------------- /pipeline/reach-es-extractor/refparse/utils/exact_match.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-es-extractor/refparse/utils/exact_match.py -------------------------------------------------------------------------------- /pipeline/reach-es-extractor/refparse/utils/file_manager.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-es-extractor/refparse/utils/file_manager.py -------------------------------------------------------------------------------- /pipeline/reach-es-extractor/refparse/utils/fuzzy_match.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-es-extractor/refparse/utils/fuzzy_match.py -------------------------------------------------------------------------------- /pipeline/reach-es-extractor/refparse/utils/parse.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-es-extractor/refparse/utils/parse.py -------------------------------------------------------------------------------- /pipeline/reach-es-extractor/refparse/utils/s3.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-es-extractor/refparse/utils/s3.py -------------------------------------------------------------------------------- /pipeline/reach-es-extractor/refparse/utils/serialiser.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-es-extractor/refparse/utils/serialiser.py -------------------------------------------------------------------------------- /pipeline/reach-es-extractor/requirements.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-es-extractor/requirements.txt -------------------------------------------------------------------------------- /pipeline/reach-es-indexer/Dockerfile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-es-indexer/Dockerfile -------------------------------------------------------------------------------- /pipeline/reach-es-indexer/index_task.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-es-indexer/index_task.py -------------------------------------------------------------------------------- /pipeline/reach-es-indexer/requirements.txt: -------------------------------------------------------------------------------- 1 | elasticsearch 2 | -------------------------------------------------------------------------------- /pipeline/reach-fuzzy-matcher/Dockerfile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-fuzzy-matcher/Dockerfile -------------------------------------------------------------------------------- /pipeline/reach-fuzzy-matcher/fuzzymatcher_task.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-fuzzy-matcher/fuzzymatcher_task.py -------------------------------------------------------------------------------- /pipeline/reach-fuzzy-matcher/requirements.txt: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /pipeline/reach-parser/Dockerfile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-parser/Dockerfile -------------------------------------------------------------------------------- /pipeline/reach-parser/Dockerfile.test: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-parser/Dockerfile.test -------------------------------------------------------------------------------- /pipeline/reach-parser/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /pipeline/reach-parser/normalizer/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /pipeline/reach-parser/normalizer/title_normalizer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-parser/normalizer/title_normalizer.py -------------------------------------------------------------------------------- /pipeline/reach-parser/parser_task.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-parser/parser_task.py -------------------------------------------------------------------------------- /pipeline/reach-parser/pdf_parser/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /pipeline/reach-parser/pdf_parser/main.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-parser/pdf_parser/main.py -------------------------------------------------------------------------------- /pipeline/reach-parser/pdf_parser/objects/PdfObjects.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-parser/pdf_parser/objects/PdfObjects.py -------------------------------------------------------------------------------- /pipeline/reach-parser/pdf_parser/objects/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /pipeline/reach-parser/pdf_parser/pdf_parse.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-parser/pdf_parser/pdf_parse.py -------------------------------------------------------------------------------- /pipeline/reach-parser/pdf_parser/resources/keywords.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-parser/pdf_parser/resources/keywords.txt -------------------------------------------------------------------------------- /pipeline/reach-parser/pdf_parser/resources/section_keywords.txt: -------------------------------------------------------------------------------- 1 | reference 2 | bibliograph 3 | endnote -------------------------------------------------------------------------------- /pipeline/reach-parser/pdf_parser/tests/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /pipeline/reach-parser/pdf_parser/tests/test_pdf_objects.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-parser/pdf_parser/tests/test_pdf_objects.py -------------------------------------------------------------------------------- /pipeline/reach-parser/pdf_parser/tests/test_pdf_parser_tools.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-parser/pdf_parser/tests/test_pdf_parser_tools.py -------------------------------------------------------------------------------- /pipeline/reach-parser/pdf_parser/tools/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /pipeline/reach-parser/pdf_parser/tools/dbTools.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-parser/pdf_parser/tools/dbTools.py -------------------------------------------------------------------------------- /pipeline/reach-parser/pdf_parser/tools/extraction.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-parser/pdf_parser/tools/extraction.py -------------------------------------------------------------------------------- /pipeline/reach-parser/requirements.txt: -------------------------------------------------------------------------------- 1 | attrs 2 | boto3 3 | lxml 4 | pyahocorasick 5 | -------------------------------------------------------------------------------- /pipeline/reach-scraper/Dockerfile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-scraper/Dockerfile -------------------------------------------------------------------------------- /pipeline/reach-scraper/Dockerfile.test: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-scraper/Dockerfile.test -------------------------------------------------------------------------------- /pipeline/reach-scraper/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-scraper/README.md -------------------------------------------------------------------------------- /pipeline/reach-scraper/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /pipeline/reach-scraper/docker-compose.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-scraper/docker-compose.yaml -------------------------------------------------------------------------------- /pipeline/reach-scraper/pg_exists.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-scraper/pg_exists.py -------------------------------------------------------------------------------- /pipeline/reach-scraper/pg_isready.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-scraper/pg_isready.py -------------------------------------------------------------------------------- /pipeline/reach-scraper/requirements.txt: -------------------------------------------------------------------------------- 1 | scrapy 2 | -------------------------------------------------------------------------------- /pipeline/reach-scraper/scrapy.cfg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-scraper/scrapy.cfg -------------------------------------------------------------------------------- /pipeline/reach-scraper/spider_task.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-scraper/spider_task.py -------------------------------------------------------------------------------- /pipeline/reach-scraper/wsf_scraping/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /pipeline/reach-scraper/wsf_scraping/contracts.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-scraper/wsf_scraping/contracts.py -------------------------------------------------------------------------------- /pipeline/reach-scraper/wsf_scraping/feed_storage.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-scraper/wsf_scraping/feed_storage.py -------------------------------------------------------------------------------- /pipeline/reach-scraper/wsf_scraping/filter.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-scraper/wsf_scraping/filter.py -------------------------------------------------------------------------------- /pipeline/reach-scraper/wsf_scraping/items.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-scraper/wsf_scraping/items.py -------------------------------------------------------------------------------- /pipeline/reach-scraper/wsf_scraping/middlewares.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-scraper/wsf_scraping/middlewares.py -------------------------------------------------------------------------------- /pipeline/reach-scraper/wsf_scraping/pipelines.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-scraper/wsf_scraping/pipelines.py -------------------------------------------------------------------------------- /pipeline/reach-scraper/wsf_scraping/settings.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-scraper/wsf_scraping/settings.py -------------------------------------------------------------------------------- /pipeline/reach-scraper/wsf_scraping/spiders/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-scraper/wsf_scraping/spiders/__init__.py -------------------------------------------------------------------------------- /pipeline/reach-scraper/wsf_scraping/spiders/acme_spider.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-scraper/wsf_scraping/spiders/acme_spider.py -------------------------------------------------------------------------------- /pipeline/reach-scraper/wsf_scraping/spiders/base_spider.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-scraper/wsf_scraping/spiders/base_spider.py -------------------------------------------------------------------------------- /pipeline/reach-scraper/wsf_scraping/spiders/gov_spider.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-scraper/wsf_scraping/spiders/gov_spider.py -------------------------------------------------------------------------------- /pipeline/reach-scraper/wsf_scraping/spiders/msf_spider.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-scraper/wsf_scraping/spiders/msf_spider.py -------------------------------------------------------------------------------- /pipeline/reach-scraper/wsf_scraping/spiders/nice_spider.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-scraper/wsf_scraping/spiders/nice_spider.py -------------------------------------------------------------------------------- /pipeline/reach-scraper/wsf_scraping/spiders/parliament_spider.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-scraper/wsf_scraping/spiders/parliament_spider.py -------------------------------------------------------------------------------- /pipeline/reach-scraper/wsf_scraping/spiders/unicef_spider.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-scraper/wsf_scraping/spiders/unicef_spider.py -------------------------------------------------------------------------------- /pipeline/reach-scraper/wsf_scraping/spiders/who_iris_spider.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-scraper/wsf_scraping/spiders/who_iris_spider.py -------------------------------------------------------------------------------- /pipeline/reach-scraper/wsf_scraping/tests/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /pipeline/reach-scraper/wsf_scraping/tests/test_gov_spider.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-scraper/wsf_scraping/tests/test_gov_spider.py -------------------------------------------------------------------------------- /pipeline/reach-scraper/wsf_scraping/tests/test_msf_spider.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-scraper/wsf_scraping/tests/test_msf_spider.py -------------------------------------------------------------------------------- /pipeline/reach-scraper/wsf_scraping/tests/test_nice_spider.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-scraper/wsf_scraping/tests/test_nice_spider.py -------------------------------------------------------------------------------- /pipeline/reach-scraper/wsf_scraping/tests/test_parliament_spider.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-scraper/wsf_scraping/tests/test_parliament_spider.py -------------------------------------------------------------------------------- /pipeline/reach-scraper/wsf_scraping/tests/test_scraper_spiders.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-scraper/wsf_scraping/tests/test_scraper_spiders.py -------------------------------------------------------------------------------- /pipeline/reach-scraper/wsf_scraping/tests/test_unicef_spider.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-scraper/wsf_scraping/tests/test_unicef_spider.py -------------------------------------------------------------------------------- /pipeline/reach-scraper/wsf_scraping/tests/test_who_spider.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/pipeline/reach-scraper/wsf_scraping/tests/test_who_spider.py -------------------------------------------------------------------------------- /requirements.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/requirements.txt -------------------------------------------------------------------------------- /test_target/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/test_target/README.md -------------------------------------------------------------------------------- /test_target/inner_page.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/test_target/inner_page.html -------------------------------------------------------------------------------- /test_target/page.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/test_target/page.html -------------------------------------------------------------------------------- /test_target/target_server.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/test_target/target_server.py -------------------------------------------------------------------------------- /web/.babelrc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/.babelrc -------------------------------------------------------------------------------- /web/.dockerignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/.dockerignore -------------------------------------------------------------------------------- /web/.eslintrc.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/.eslintrc.json -------------------------------------------------------------------------------- /web/Dockerfile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/Dockerfile -------------------------------------------------------------------------------- /web/Makefile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/Makefile -------------------------------------------------------------------------------- /web/bin/update_vendor.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/bin/update_vendor.sh -------------------------------------------------------------------------------- /web/config/docker.config.toml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/config/docker.config.toml -------------------------------------------------------------------------------- /web/config/local.config.toml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/config/local.config.toml -------------------------------------------------------------------------------- /web/package-lock.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/package-lock.json -------------------------------------------------------------------------------- /web/package.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/package.json -------------------------------------------------------------------------------- /web/requirements.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/requirements.txt -------------------------------------------------------------------------------- /web/setup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/setup.py -------------------------------------------------------------------------------- /web/web/__init__.py: -------------------------------------------------------------------------------- 1 | from .wsgi import application 2 | -------------------------------------------------------------------------------- /web/web/api.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/api.py -------------------------------------------------------------------------------- /web/web/config.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/config.py -------------------------------------------------------------------------------- /web/web/db.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/db.py -------------------------------------------------------------------------------- /web/web/docs/.gitignore: -------------------------------------------------------------------------------- 1 | env 2 | !requirements.txt 3 | -------------------------------------------------------------------------------- /web/web/docs/Makefile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/docs/Makefile -------------------------------------------------------------------------------- /web/web/docs/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/docs/README.md -------------------------------------------------------------------------------- /web/web/docs/build/doctrees/api.doctree: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/docs/build/doctrees/api.doctree -------------------------------------------------------------------------------- /web/web/docs/build/doctrees/environment.pickle: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/docs/build/doctrees/environment.pickle -------------------------------------------------------------------------------- /web/web/docs/build/doctrees/index.doctree: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/docs/build/doctrees/index.doctree -------------------------------------------------------------------------------- /web/web/docs/build/doctrees/intro.doctree: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/docs/build/doctrees/intro.doctree -------------------------------------------------------------------------------- /web/web/docs/build/html/.buildinfo: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/docs/build/html/.buildinfo -------------------------------------------------------------------------------- /web/web/docs/build/html/_static/basic.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/docs/build/html/_static/basic.css -------------------------------------------------------------------------------- /web/web/docs/build/html/_static/css/badge_only.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/docs/build/html/_static/css/badge_only.css -------------------------------------------------------------------------------- /web/web/docs/build/html/_static/css/theme.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/docs/build/html/_static/css/theme.css -------------------------------------------------------------------------------- /web/web/docs/build/html/_static/doctools.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/docs/build/html/_static/doctools.js -------------------------------------------------------------------------------- /web/web/docs/build/html/_static/documentation_options.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/docs/build/html/_static/documentation_options.js -------------------------------------------------------------------------------- /web/web/docs/build/html/_static/file.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/docs/build/html/_static/file.png -------------------------------------------------------------------------------- /web/web/docs/build/html/_static/fonts/Inconsolata-Bold.ttf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/docs/build/html/_static/fonts/Inconsolata-Bold.ttf -------------------------------------------------------------------------------- /web/web/docs/build/html/_static/fonts/Inconsolata-Regular.ttf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/docs/build/html/_static/fonts/Inconsolata-Regular.ttf -------------------------------------------------------------------------------- /web/web/docs/build/html/_static/fonts/Inconsolata.ttf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/docs/build/html/_static/fonts/Inconsolata.ttf -------------------------------------------------------------------------------- /web/web/docs/build/html/_static/fonts/Lato-Bold.ttf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/docs/build/html/_static/fonts/Lato-Bold.ttf -------------------------------------------------------------------------------- /web/web/docs/build/html/_static/fonts/Lato-Regular.ttf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/docs/build/html/_static/fonts/Lato-Regular.ttf -------------------------------------------------------------------------------- /web/web/docs/build/html/_static/fonts/Lato/lato-bold.eot: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/docs/build/html/_static/fonts/Lato/lato-bold.eot -------------------------------------------------------------------------------- /web/web/docs/build/html/_static/fonts/Lato/lato-bold.ttf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/docs/build/html/_static/fonts/Lato/lato-bold.ttf -------------------------------------------------------------------------------- /web/web/docs/build/html/_static/fonts/Lato/lato-bold.woff: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/docs/build/html/_static/fonts/Lato/lato-bold.woff -------------------------------------------------------------------------------- /web/web/docs/build/html/_static/fonts/Lato/lato-bold.woff2: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/docs/build/html/_static/fonts/Lato/lato-bold.woff2 -------------------------------------------------------------------------------- /web/web/docs/build/html/_static/fonts/Lato/lato-bolditalic.eot: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/docs/build/html/_static/fonts/Lato/lato-bolditalic.eot -------------------------------------------------------------------------------- /web/web/docs/build/html/_static/fonts/Lato/lato-bolditalic.ttf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/docs/build/html/_static/fonts/Lato/lato-bolditalic.ttf -------------------------------------------------------------------------------- /web/web/docs/build/html/_static/fonts/Lato/lato-bolditalic.woff: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/docs/build/html/_static/fonts/Lato/lato-bolditalic.woff -------------------------------------------------------------------------------- /web/web/docs/build/html/_static/fonts/Lato/lato-bolditalic.woff2: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/docs/build/html/_static/fonts/Lato/lato-bolditalic.woff2 -------------------------------------------------------------------------------- /web/web/docs/build/html/_static/fonts/Lato/lato-italic.eot: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/docs/build/html/_static/fonts/Lato/lato-italic.eot -------------------------------------------------------------------------------- /web/web/docs/build/html/_static/fonts/Lato/lato-italic.ttf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/docs/build/html/_static/fonts/Lato/lato-italic.ttf -------------------------------------------------------------------------------- /web/web/docs/build/html/_static/fonts/Lato/lato-italic.woff: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/docs/build/html/_static/fonts/Lato/lato-italic.woff -------------------------------------------------------------------------------- /web/web/docs/build/html/_static/fonts/Lato/lato-italic.woff2: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/docs/build/html/_static/fonts/Lato/lato-italic.woff2 -------------------------------------------------------------------------------- /web/web/docs/build/html/_static/fonts/Lato/lato-regular.eot: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/docs/build/html/_static/fonts/Lato/lato-regular.eot -------------------------------------------------------------------------------- /web/web/docs/build/html/_static/fonts/Lato/lato-regular.ttf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/docs/build/html/_static/fonts/Lato/lato-regular.ttf -------------------------------------------------------------------------------- /web/web/docs/build/html/_static/fonts/Lato/lato-regular.woff: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/docs/build/html/_static/fonts/Lato/lato-regular.woff -------------------------------------------------------------------------------- /web/web/docs/build/html/_static/fonts/Lato/lato-regular.woff2: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/docs/build/html/_static/fonts/Lato/lato-regular.woff2 -------------------------------------------------------------------------------- /web/web/docs/build/html/_static/fonts/RobotoSlab-Bold.ttf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/docs/build/html/_static/fonts/RobotoSlab-Bold.ttf -------------------------------------------------------------------------------- /web/web/docs/build/html/_static/fonts/RobotoSlab-Regular.ttf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/docs/build/html/_static/fonts/RobotoSlab-Regular.ttf -------------------------------------------------------------------------------- /web/web/docs/build/html/_static/fonts/RobotoSlab/roboto-slab-v7-bold.eot: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/docs/build/html/_static/fonts/RobotoSlab/roboto-slab-v7-bold.eot -------------------------------------------------------------------------------- /web/web/docs/build/html/_static/fonts/RobotoSlab/roboto-slab-v7-bold.ttf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/docs/build/html/_static/fonts/RobotoSlab/roboto-slab-v7-bold.ttf -------------------------------------------------------------------------------- /web/web/docs/build/html/_static/fonts/RobotoSlab/roboto-slab-v7-bold.woff: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/docs/build/html/_static/fonts/RobotoSlab/roboto-slab-v7-bold.woff -------------------------------------------------------------------------------- /web/web/docs/build/html/_static/fonts/RobotoSlab/roboto-slab-v7-bold.woff2: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/docs/build/html/_static/fonts/RobotoSlab/roboto-slab-v7-bold.woff2 -------------------------------------------------------------------------------- /web/web/docs/build/html/_static/fonts/RobotoSlab/roboto-slab-v7-regular.eot: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/docs/build/html/_static/fonts/RobotoSlab/roboto-slab-v7-regular.eot -------------------------------------------------------------------------------- /web/web/docs/build/html/_static/fonts/RobotoSlab/roboto-slab-v7-regular.ttf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/docs/build/html/_static/fonts/RobotoSlab/roboto-slab-v7-regular.ttf -------------------------------------------------------------------------------- /web/web/docs/build/html/_static/fonts/RobotoSlab/roboto-slab-v7-regular.woff: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/docs/build/html/_static/fonts/RobotoSlab/roboto-slab-v7-regular.woff -------------------------------------------------------------------------------- /web/web/docs/build/html/_static/fonts/RobotoSlab/roboto-slab-v7-regular.woff2: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/docs/build/html/_static/fonts/RobotoSlab/roboto-slab-v7-regular.woff2 -------------------------------------------------------------------------------- /web/web/docs/build/html/_static/fonts/fontawesome-webfont.eot: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/docs/build/html/_static/fonts/fontawesome-webfont.eot -------------------------------------------------------------------------------- /web/web/docs/build/html/_static/fonts/fontawesome-webfont.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/docs/build/html/_static/fonts/fontawesome-webfont.svg -------------------------------------------------------------------------------- /web/web/docs/build/html/_static/fonts/fontawesome-webfont.ttf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/docs/build/html/_static/fonts/fontawesome-webfont.ttf -------------------------------------------------------------------------------- /web/web/docs/build/html/_static/fonts/fontawesome-webfont.woff: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/docs/build/html/_static/fonts/fontawesome-webfont.woff -------------------------------------------------------------------------------- /web/web/docs/build/html/_static/fonts/fontawesome-webfont.woff2: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/docs/build/html/_static/fonts/fontawesome-webfont.woff2 -------------------------------------------------------------------------------- /web/web/docs/build/html/_static/jquery-3.5.1.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/docs/build/html/_static/jquery-3.5.1.js -------------------------------------------------------------------------------- /web/web/docs/build/html/_static/jquery.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/docs/build/html/_static/jquery.js -------------------------------------------------------------------------------- /web/web/docs/build/html/_static/js/modernizr.min.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/docs/build/html/_static/js/modernizr.min.js -------------------------------------------------------------------------------- /web/web/docs/build/html/_static/js/theme.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/docs/build/html/_static/js/theme.js -------------------------------------------------------------------------------- /web/web/docs/build/html/_static/language_data.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/docs/build/html/_static/language_data.js -------------------------------------------------------------------------------- /web/web/docs/build/html/_static/minus.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/docs/build/html/_static/minus.png -------------------------------------------------------------------------------- /web/web/docs/build/html/_static/plus.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/docs/build/html/_static/plus.png -------------------------------------------------------------------------------- /web/web/docs/build/html/_static/pygments.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/docs/build/html/_static/pygments.css -------------------------------------------------------------------------------- /web/web/docs/build/html/_static/searchtools.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/docs/build/html/_static/searchtools.js -------------------------------------------------------------------------------- /web/web/docs/build/html/_static/underscore-1.3.1.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/docs/build/html/_static/underscore-1.3.1.js -------------------------------------------------------------------------------- /web/web/docs/build/html/_static/underscore.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/docs/build/html/_static/underscore.js -------------------------------------------------------------------------------- /web/web/docs/build/html/api.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/docs/build/html/api.html -------------------------------------------------------------------------------- /web/web/docs/build/html/genindex.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/docs/build/html/genindex.html -------------------------------------------------------------------------------- /web/web/docs/build/html/index.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/docs/build/html/index.html -------------------------------------------------------------------------------- /web/web/docs/build/html/intro.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/docs/build/html/intro.html -------------------------------------------------------------------------------- /web/web/docs/build/html/objects.inv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/docs/build/html/objects.inv -------------------------------------------------------------------------------- /web/web/docs/build/html/search.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/docs/build/html/search.html -------------------------------------------------------------------------------- /web/web/docs/build/html/searchindex.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/docs/build/html/searchindex.js -------------------------------------------------------------------------------- /web/web/docs/make.bat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/docs/make.bat -------------------------------------------------------------------------------- /web/web/docs/requirements.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/docs/requirements.txt -------------------------------------------------------------------------------- /web/web/docs/source/api.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/docs/source/api.md -------------------------------------------------------------------------------- /web/web/docs/source/conf.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/docs/source/conf.py -------------------------------------------------------------------------------- /web/web/docs/source/index.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/docs/source/index.rst -------------------------------------------------------------------------------- /web/web/docs/source/intro.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/docs/source/intro.md -------------------------------------------------------------------------------- /web/web/src/css/about.less: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/css/about.less -------------------------------------------------------------------------------- /web/web/src/css/contact.less: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/css/contact.less -------------------------------------------------------------------------------- /web/web/src/css/footer.less: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/css/footer.less -------------------------------------------------------------------------------- /web/web/src/css/header.less: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/css/header.less -------------------------------------------------------------------------------- /web/web/src/css/home.less: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/css/home.less -------------------------------------------------------------------------------- /web/web/src/css/icons.less: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/css/icons.less -------------------------------------------------------------------------------- /web/web/src/css/results.less: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/css/results.less -------------------------------------------------------------------------------- /web/web/src/css/search.less: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/css/search.less -------------------------------------------------------------------------------- /web/web/src/css/style.less: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/css/style.less -------------------------------------------------------------------------------- /web/web/src/css/variables.less: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/css/variables.less -------------------------------------------------------------------------------- /web/web/src/css/wellcome-bold-webfont.woff2: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/css/wellcome-bold-webfont.woff2 -------------------------------------------------------------------------------- /web/web/src/favicon/android-icon-144x144.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/favicon/android-icon-144x144.png -------------------------------------------------------------------------------- /web/web/src/favicon/android-icon-192x192.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/favicon/android-icon-192x192.png -------------------------------------------------------------------------------- /web/web/src/favicon/android-icon-36x36.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/favicon/android-icon-36x36.png -------------------------------------------------------------------------------- /web/web/src/favicon/android-icon-48x48.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/favicon/android-icon-48x48.png -------------------------------------------------------------------------------- /web/web/src/favicon/android-icon-72x72.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/favicon/android-icon-72x72.png -------------------------------------------------------------------------------- /web/web/src/favicon/android-icon-96x96.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/favicon/android-icon-96x96.png -------------------------------------------------------------------------------- /web/web/src/favicon/apple-icon-114x114.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/favicon/apple-icon-114x114.png -------------------------------------------------------------------------------- /web/web/src/favicon/apple-icon-120x120.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/favicon/apple-icon-120x120.png -------------------------------------------------------------------------------- /web/web/src/favicon/apple-icon-144x144.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/favicon/apple-icon-144x144.png -------------------------------------------------------------------------------- /web/web/src/favicon/apple-icon-152x152.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/favicon/apple-icon-152x152.png -------------------------------------------------------------------------------- /web/web/src/favicon/apple-icon-180x180.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/favicon/apple-icon-180x180.png -------------------------------------------------------------------------------- /web/web/src/favicon/apple-icon-57x57.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/favicon/apple-icon-57x57.png -------------------------------------------------------------------------------- /web/web/src/favicon/apple-icon-60x60.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/favicon/apple-icon-60x60.png -------------------------------------------------------------------------------- /web/web/src/favicon/apple-icon-72x72.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/favicon/apple-icon-72x72.png -------------------------------------------------------------------------------- /web/web/src/favicon/apple-icon-76x76.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/favicon/apple-icon-76x76.png -------------------------------------------------------------------------------- /web/web/src/favicon/apple-icon-precomposed.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/favicon/apple-icon-precomposed.png -------------------------------------------------------------------------------- /web/web/src/favicon/apple-icon.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/favicon/apple-icon.png -------------------------------------------------------------------------------- /web/web/src/favicon/browserconfig.xml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/favicon/browserconfig.xml -------------------------------------------------------------------------------- /web/web/src/favicon/favicon-16x16.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/favicon/favicon-16x16.png -------------------------------------------------------------------------------- /web/web/src/favicon/favicon-32x32.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/favicon/favicon-32x32.png -------------------------------------------------------------------------------- /web/web/src/favicon/favicon-96x96.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/favicon/favicon-96x96.png -------------------------------------------------------------------------------- /web/web/src/favicon/favicon.ico: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/favicon/favicon.ico -------------------------------------------------------------------------------- /web/web/src/favicon/manifest.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/favicon/manifest.json -------------------------------------------------------------------------------- /web/web/src/favicon/ms-icon-144x144.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/favicon/ms-icon-144x144.png -------------------------------------------------------------------------------- /web/web/src/favicon/ms-icon-150x150.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/favicon/ms-icon-150x150.png -------------------------------------------------------------------------------- /web/web/src/favicon/ms-icon-310x310.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/favicon/ms-icon-310x310.png -------------------------------------------------------------------------------- /web/web/src/favicon/ms-icon-70x70.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/favicon/ms-icon-70x70.png -------------------------------------------------------------------------------- /web/web/src/images/Icon_ New-window.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/images/Icon_ New-window.svg -------------------------------------------------------------------------------- /web/web/src/images/Icon_About_Accuracy_100px.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/images/Icon_About_Accuracy_100px.svg -------------------------------------------------------------------------------- /web/web/src/images/Icon_About_Open-source_100px.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/images/Icon_About_Open-source_100px.svg -------------------------------------------------------------------------------- /web/web/src/images/Icon_About_Transparent_100px.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/images/Icon_About_Transparent_100px.svg -------------------------------------------------------------------------------- /web/web/src/images/Icon_Arrow_down.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/images/Icon_Arrow_down.svg -------------------------------------------------------------------------------- /web/web/src/images/Icon_Chevron_Double.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/images/Icon_Chevron_Double.svg -------------------------------------------------------------------------------- /web/web/src/images/Icon_Chevron_Down.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/images/Icon_Chevron_Down.svg -------------------------------------------------------------------------------- /web/web/src/images/Icon_Download_16px.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/images/Icon_Download_16px.svg -------------------------------------------------------------------------------- /web/web/src/images/Icon_How_Download_160px.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/images/Icon_How_Download_160px.svg -------------------------------------------------------------------------------- /web/web/src/images/Icon_How_Extract_160px.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/images/Icon_How_Extract_160px.svg -------------------------------------------------------------------------------- /web/web/src/images/Icon_How_Match_160px.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/images/Icon_How_Match_160px.svg -------------------------------------------------------------------------------- /web/web/src/images/Icon_Info.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/images/Icon_Info.svg -------------------------------------------------------------------------------- /web/web/src/images/Icon_Menu_16px.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/images/Icon_Menu_16px.svg -------------------------------------------------------------------------------- /web/web/src/images/Icon_Policy_24px.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/images/Icon_Policy_24px.svg -------------------------------------------------------------------------------- /web/web/src/images/Icon_Research_24px.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/images/Icon_Research_24px.svg -------------------------------------------------------------------------------- /web/web/src/images/Icon_Scroll-arow.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/images/Icon_Scroll-arow.svg -------------------------------------------------------------------------------- /web/web/src/images/Icon_Search_16px.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/images/Icon_Search_16px.svg -------------------------------------------------------------------------------- /web/web/src/images/Icon_Sort-by_16px.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/images/Icon_Sort-by_16px.svg -------------------------------------------------------------------------------- /web/web/src/images/Icon_new_window.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/images/Icon_new_window.svg -------------------------------------------------------------------------------- /web/web/src/images/Illustration_Glass.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/images/Illustration_Glass.svg -------------------------------------------------------------------------------- /web/web/src/images/Illustration_Papers.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/images/Illustration_Papers.svg -------------------------------------------------------------------------------- /web/web/src/images/Image_Product-shot.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/images/Image_Product-shot.png -------------------------------------------------------------------------------- /web/web/src/images/Shape_01.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/images/Shape_01.svg -------------------------------------------------------------------------------- /web/web/src/images/Shape_02.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/images/Shape_02.svg -------------------------------------------------------------------------------- /web/web/src/images/Wellcome_logo.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/images/Wellcome_logo.svg -------------------------------------------------------------------------------- /web/web/src/images/reach_alpha_branding.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/images/reach_alpha_branding.svg -------------------------------------------------------------------------------- /web/web/src/images/reach_site_view.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/images/reach_site_view.png -------------------------------------------------------------------------------- /web/web/src/images/wave.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/images/wave.svg -------------------------------------------------------------------------------- /web/web/src/images/wellcome-logo.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/images/wellcome-logo.svg -------------------------------------------------------------------------------- /web/web/src/images/white-wave.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/images/white-wave.svg -------------------------------------------------------------------------------- /web/web/src/js/app.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/js/app.js -------------------------------------------------------------------------------- /web/web/src/js/citationsTable.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/js/citationsTable.js -------------------------------------------------------------------------------- /web/web/src/js/clearSearch.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/js/clearSearch.js -------------------------------------------------------------------------------- /web/web/src/js/home.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/js/home.js -------------------------------------------------------------------------------- /web/web/src/js/policyTable.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/js/policyTable.js -------------------------------------------------------------------------------- /web/web/src/js/resultsCommon.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/js/resultsCommon.js -------------------------------------------------------------------------------- /web/web/src/js/templates/no_results.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/js/templates/no_results.js -------------------------------------------------------------------------------- /web/web/src/js/v.contact.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/js/v.contact.js -------------------------------------------------------------------------------- /web/web/src/vendor/spectre-0.5.8/spectre-exp.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/vendor/spectre-0.5.8/spectre-exp.css -------------------------------------------------------------------------------- /web/web/src/vendor/spectre-0.5.8/spectre-exp.min.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/vendor/spectre-0.5.8/spectre-exp.min.css -------------------------------------------------------------------------------- /web/web/src/vendor/spectre-0.5.8/spectre-icons.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/vendor/spectre-0.5.8/spectre-icons.css -------------------------------------------------------------------------------- /web/web/src/vendor/spectre-0.5.8/spectre-icons.min.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/vendor/spectre-0.5.8/spectre-icons.min.css -------------------------------------------------------------------------------- /web/web/src/vendor/spectre-0.5.8/spectre.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/vendor/spectre-0.5.8/spectre.css -------------------------------------------------------------------------------- /web/web/src/vendor/spectre-0.5.8/spectre.min.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/vendor/spectre-0.5.8/spectre.min.css -------------------------------------------------------------------------------- /web/web/src/w-avatar-pitch-1.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/src/w-avatar-pitch-1.svg -------------------------------------------------------------------------------- /web/web/templates/about.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/templates/about.html -------------------------------------------------------------------------------- /web/web/templates/base.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/templates/base.html -------------------------------------------------------------------------------- /web/web/templates/contact.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/templates/contact.html -------------------------------------------------------------------------------- /web/web/templates/how-it-works.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/templates/how-it-works.html -------------------------------------------------------------------------------- /web/web/templates/index.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/templates/index.html -------------------------------------------------------------------------------- /web/web/templates/privacy.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/templates/privacy.html -------------------------------------------------------------------------------- /web/web/templates/results/citations.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/templates/results/citations.html -------------------------------------------------------------------------------- /web/web/templates/results/policy-docs.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/templates/results/policy-docs.html -------------------------------------------------------------------------------- /web/web/templates/search/citations.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/templates/search/citations.html -------------------------------------------------------------------------------- /web/web/templates/search/policy-docs.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/templates/search/policy-docs.html -------------------------------------------------------------------------------- /web/web/tests/test_search_api.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/tests/test_search_api.py -------------------------------------------------------------------------------- /web/web/tests/test_template.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/tests/test_template.py -------------------------------------------------------------------------------- /web/web/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/utils.py -------------------------------------------------------------------------------- /web/web/views/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/views/__init__.py -------------------------------------------------------------------------------- /web/web/views/api/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/views/api/__init__.py -------------------------------------------------------------------------------- /web/web/views/api/api_search_citations.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/views/api/api_search_citations.py -------------------------------------------------------------------------------- /web/web/views/api/api_search_policies.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/views/api/api_search_policies.py -------------------------------------------------------------------------------- /web/web/views/api/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/views/api/utils.py -------------------------------------------------------------------------------- /web/web/views/apidocs.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/views/apidocs.py -------------------------------------------------------------------------------- /web/web/views/contact.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/views/contact.py -------------------------------------------------------------------------------- /web/web/views/opt_search.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/views/opt_search.py -------------------------------------------------------------------------------- /web/web/views/robotstxt.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/views/robotstxt.py -------------------------------------------------------------------------------- /web/web/views/search/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/views/search/__init__.py -------------------------------------------------------------------------------- /web/web/views/search/citations.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/views/search/citations.py -------------------------------------------------------------------------------- /web/web/views/search/export_citations.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/views/search/export_citations.py -------------------------------------------------------------------------------- /web/web/views/search/export_policies.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/views/search/export_policies.py -------------------------------------------------------------------------------- /web/web/views/search/policies.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/views/search/policies.py -------------------------------------------------------------------------------- /web/web/views/search_exports.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/views/search_exports.py -------------------------------------------------------------------------------- /web/web/views/template.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/views/template.py -------------------------------------------------------------------------------- /web/web/wsgi.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wellcometrust/reach/HEAD/web/web/wsgi.py --------------------------------------------------------------------------------