├── AddConsToDeepSeaRes.py ├── BiRen.py ├── BiRen_trained_model.npy ├── DeepSEA.lua ├── ExtractCoreRegion.py ├── OneHotTransform.py ├── README.md ├── RNNDataFormat.py ├── SortConsBed.py ├── bigWigAverageOverBed ├── dataEncode.py ├── example.bed ├── example ├── example.data.npy ├── example.mask.npy └── example.out └── transformTo1Kformat.py /AddConsToDeepSeaRes.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wenjiegroup/BiRen/HEAD/AddConsToDeepSeaRes.py -------------------------------------------------------------------------------- /BiRen.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wenjiegroup/BiRen/HEAD/BiRen.py -------------------------------------------------------------------------------- /BiRen_trained_model.npy: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wenjiegroup/BiRen/HEAD/BiRen_trained_model.npy -------------------------------------------------------------------------------- /DeepSEA.lua: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wenjiegroup/BiRen/HEAD/DeepSEA.lua -------------------------------------------------------------------------------- /ExtractCoreRegion.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wenjiegroup/BiRen/HEAD/ExtractCoreRegion.py -------------------------------------------------------------------------------- /OneHotTransform.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wenjiegroup/BiRen/HEAD/OneHotTransform.py -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wenjiegroup/BiRen/HEAD/README.md -------------------------------------------------------------------------------- /RNNDataFormat.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wenjiegroup/BiRen/HEAD/RNNDataFormat.py -------------------------------------------------------------------------------- /SortConsBed.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wenjiegroup/BiRen/HEAD/SortConsBed.py -------------------------------------------------------------------------------- /bigWigAverageOverBed: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wenjiegroup/BiRen/HEAD/bigWigAverageOverBed -------------------------------------------------------------------------------- /dataEncode.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wenjiegroup/BiRen/HEAD/dataEncode.py -------------------------------------------------------------------------------- /example.bed: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wenjiegroup/BiRen/HEAD/example.bed -------------------------------------------------------------------------------- /example/example.data.npy: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wenjiegroup/BiRen/HEAD/example/example.data.npy -------------------------------------------------------------------------------- /example/example.mask.npy: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wenjiegroup/BiRen/HEAD/example/example.mask.npy -------------------------------------------------------------------------------- /example/example.out: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wenjiegroup/BiRen/HEAD/example/example.out -------------------------------------------------------------------------------- /transformTo1Kformat.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wenjiegroup/BiRen/HEAD/transformTo1Kformat.py --------------------------------------------------------------------------------