├── .Rbuildignore ├── .gitignore ├── DESCRIPTION ├── NAMESPACE ├── R ├── bmediatR.R ├── plot_mediation.R ├── pval_mediation.R └── sim_mediation.R ├── README.md ├── data ├── K_DO_example.RDS ├── M_DO_example.RDS ├── X_DO_example.RDS ├── Y_DO_example.RDS ├── annot_do_example.RDS └── covar_DO_example.RDS ├── man ├── bmediatR.Rd ├── bmediatR_v0.Rd ├── estimate_empirical_prior.Rd ├── get_approx_pval.Rd ├── get_perm_pval.Rd ├── model_info.Rd ├── model_matrix_from_ID.Rd ├── plot_posterior_bar.Rd ├── plot_posterior_odds.Rd ├── plot_prior_bar.Rd ├── posterior_summary.Rd ├── reexports.Rd ├── return_ln_prior_c_from_presets.Rd ├── return_preset_odds_index.Rd ├── sim_balanced_locus.Rd ├── sim_mpp_data.Rd ├── sim_mpp_single_locus.Rd ├── sim_mpp_single_locus_partial.Rd ├── sim_target_from_mediator.Rd └── sumtozero_contrast.Rd └── vignettes ├── bmediatR_in_DO.Rmd ├── bmediatR_in_DO.html ├── bmediatr_manuscript_support_functions.R ├── colocal_DAG.png ├── fig1.png ├── mediation_DAG.png ├── 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