├── .gitignore ├── LICENSE ├── README.md ├── ckpt └── .placeholder ├── data └── .placeholder ├── dataset ├── __init__.py ├── fasta_dataset.py ├── retrieval_dataset.py └── training_dataset.py ├── environment.yml ├── model ├── __init__.py └── esm_model.py ├── result └── .placeholder ├── run_gen_repr.sh ├── run_gen_repr_nockpt.sh ├── scripts ├── cp_af2.py ├── download_pdb.py ├── download_pfam.py ├── download_uniprot.py ├── extract_seq_from_pdb.py ├── generate_representations.py ├── inference.py ├── mpr_process.py ├── retrieval.py └── train.py └── utils └── fasta.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/westlake-repl/ESM-Ezy/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/westlake-repl/ESM-Ezy/HEAD/LICENSE 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