├── .circleci └── config.yml ├── .coveragerc ├── .gitignore ├── .rtdrequirements.txt ├── .zenodo.json ├── CHANGELOG.md ├── LICENSE ├── MANIFEST.in ├── README.md ├── docs ├── CNAME ├── api.md ├── cite.md ├── features.md ├── gallery.md ├── gallery │ ├── .jupytext.toml │ ├── figures │ │ ├── atlas_circles.png │ │ ├── atlas_parcels.png │ │ ├── fischer344.png │ │ ├── hemi.png │ │ ├── measures.png │ │ ├── nbs.png │ │ ├── node_cmap.png │ │ ├── nodestyles.png │ │ ├── plot_connectivitymatrix.png │ │ ├── plot_dmn.png │ │ ├── rows1.png │ │ ├── seq1.png │ │ ├── showcase.png │ │ ├── singleview.png │ │ ├── specifying_node_color.png │ │ ├── springlayout.png │ │ ├── styles1.png │ │ ├── styles2.png │ │ ├── template_inf.png │ │ ├── template_oasis30ants.png │ │ ├── template_whs.png │ │ ├── template_whs_atlas_v3.png │ │ ├── templatestyles.png │ │ └── whs1.png │ ├── highlevel_size.ipynb │ ├── highlevel_size.py │ ├── highlight_roi.ipynb │ ├── highlight_roi.py │ ├── infant.ipynb │ ├── infant.py │ ├── nbs.ipynb │ ├── nbs.py │ ├── node_cmap.ipynb │ ├── node_cmap.py │ ├── node_styles.ipynb │ ├── node_styles.py │ ├── plot_connectivitymatrix.ipynb │ ├── plot_connectivitymatrix.py │ ├── plot_dmn.ipynb │ ├── plot_dmn.py │ ├── simple.ipynb │ ├── simple.py │ ├── specifying_node_color.ipynb │ ├── specifying_node_color.py │ ├── spring_layout.ipynb │ ├── spring_layout.py │ ├── template_styles.ipynb │ ├── template_styles.py │ ├── two_rows.ipynb │ ├── two_rows.py │ ├── whs.ipynb │ └── whs.py ├── index.md ├── kwargs.rst ├── preset.py ├── tutorial.md └── tutorial │ ├── figures │ ├── filled_voxsize.png │ ├── filled_voxsize3.png │ └── filled_voxsize7.png │ ├── tutorial1_input.ipynb │ ├── tutorial1_input.py │ ├── tutorial2_views.md │ ├── tutorial2_views.py │ └── tutorial3_connectivitymatrix.py ├── examples ├── bids_test │ ├── README.md │ ├── dataset_description.json │ ├── derivatives │ │ └── connectivity │ │ │ ├── dataset_description.json │ │ │ ├── sub-001 │ │ │ ├── ses-post │ │ │ │ └── func │ │ │ │ │ ├── sub-001_ses-post_task-a_relmat.tsv │ │ │ │ │ └── sub-001_ses-post_task-b_relmat.tsv │ │ │ └── ses-pre │ │ │ │ └── func │ │ │ │ ├── sub-001_ses-pre_task-a_relmat.tsv │ │ │ │ └── sub-001_ses-pre_task-b_relmat.tsv │ │ │ ├── sub-002 │ │ │ ├── ses-post │ │ │ │ └── func │ │ │ │ │ ├── sub-002_ses-post_task-a_relmat.tsv │ │ │ │ │ └── sub-002_ses-post_task-b_relmat.tsv │ │ │ └── ses-pre │ │ │ │ └── func │ │ │ │ ├── sub-002_ses-pre_task-a_relmat.tsv │ │ │ │ └── sub-002_ses-pre_task-b_relmat.tsv │ │ │ └── sub-003 │ │ │ ├── ses-post │ │ │ └── func │ │ │ │ ├── sub-003_ses-post_task-a_relmat.tsv │ │ │ │ └── sub-003_ses-post_task-b_relmat.tsv │ │ │ └── ses-pre │ │ │ └── func │ │ │ ├── sub-003_ses-pre_task-a_relmat.tsv │ │ │ └── sub-003_ses-pre_task-b_relmat.tsv │ ├── generate_data.py │ ├── participants.tsv │ ├── sub-001 │ │ ├── ses-post │ │ │ └── func │ │ │ │ ├── sub-001_ses-post_task-a_relmat.tsv │ │ │ │ └── sub-001_ses-post_task-b_relmat.tsv │ │ └── ses-pre │ │ │ └── func │ │ │ ├── sub-001_ses-pre_task-a_relmat.tsv │ │ │ └── sub-001_ses-pre_task-b_relmat.tsv │ ├── sub-002 │ │ ├── ses-post │ │ │ └── func │ │ │ │ ├── sub-002_ses-post_task-a_relmat.tsv │ │ │ │ └── sub-002_ses-post_task-b_relmat.tsv │ │ └── ses-pre │ │ │ └── func │ │ │ ├── sub-002_ses-pre_task-a_relmat.tsv │ │ │ └── sub-002_ses-pre_task-b_relmat.tsv │ └── sub-003 │ │ ├── ses-post │ │ └── func │ │ │ ├── sub-003_ses-post_task-a_relmat.tsv │ │ │ └── sub-003_ses-post_task-b_relmat.tsv │ │ └── ses-pre │ │ └── func │ │ ├── sub-003_ses-pre_task-a_relmat.tsv │ │ └── sub-003_ses-pre_task-b_relmat.tsv ├── example1.py ├── example2.py ├── example_edges.tsv ├── example_nodes.tsv ├── figures │ ├── atlas_circles.png │ ├── atlas_parcels.png │ ├── fischer344.png │ ├── gif1.gif │ ├── hemi.png │ ├── measures.png │ ├── rows1.png │ ├── seq1.png │ ├── showcase.png │ ├── singleview.png │ ├── styles1.png │ ├── styles2.png │ ├── template_inf.png │ ├── template_whs.png │ └── whs1.png ├── nbstestdata.csv └── showcase_image.py ├── mkdocs.yml ├── netplotbrain ├── __init__.py ├── __version.py ├── derive │ ├── __init__.py │ └── from_bids.py ├── example_data │ ├── bids_test │ │ ├── .bidsignore │ │ ├── README.md │ │ ├── dataset_description.json │ │ ├── derivatives │ │ │ └── connectivity │ │ │ │ ├── dataset_description.json │ │ │ │ ├── sub-001 │ │ │ │ ├── ses-post │ │ │ │ │ └── func │ │ │ │ │ │ ├── sub-001_ses-post_task-a_relmat.tsv │ │ │ │ │ │ └── sub-001_ses-post_task-b_relmat.tsv │ │ │ │ └── ses-pre │ │ │ │ │ └── func │ │ │ │ │ ├── sub-001_ses-pre_task-a_relmat.tsv │ │ │ │ │ └── sub-001_ses-pre_task-b_relmat.tsv │ │ │ │ ├── sub-002 │ │ │ │ ├── ses-post │ │ │ │ │ └── func │ │ │ │ │ │ ├── sub-002_ses-post_task-a_relmat.tsv │ │ │ │ │ │ └── sub-002_ses-post_task-b_relmat.tsv │ │ │ │ └── ses-pre │ │ │ │ │ └── func │ │ │ │ │ ├── sub-002_ses-pre_task-a_relmat.tsv │ │ │ │ │ └── sub-002_ses-pre_task-b_relmat.tsv │ │ │ │ └── sub-003 │ │ │ │ ├── ses-post │ │ │ │ └── func │ │ │ │ │ ├── sub-003_ses-post_task-a_relmat.tsv │ │ │ │ │ └── sub-003_ses-post_task-b_relmat.tsv │ │ │ │ └── ses-pre │ │ │ │ └── func │ │ │ │ ├── sub-003_ses-pre_task-a_relmat.tsv │ │ │ │ └── sub-003_ses-pre_task-b_relmat.tsv │ │ ├── generate_data.py │ │ ├── participants.tsv │ │ ├── sub-001 │ │ │ ├── ses-post │ │ │ │ └── func │ │ │ │ │ ├── sub-001_ses-post_task-a_relmat.tsv │ │ │ │ │ └── sub-001_ses-post_task-b_relmat.tsv │ │ │ └── ses-pre │ │ │ │ └── func │ │ │ │ ├── sub-001_ses-pre_task-a_relmat.tsv │ │ │ │ └── sub-001_ses-pre_task-b_relmat.tsv │ │ ├── sub-002 │ │ │ ├── ses-post │ │ │ │ └── func │ │ │ │ │ ├── sub-002_ses-post_task-a_relmat.tsv │ │ │ │ │ └── sub-002_ses-post_task-b_relmat.tsv │ │ │ └── ses-pre │ │ │ │ └── func │ │ │ │ ├── sub-002_ses-pre_task-a_relmat.tsv │ │ │ │ └── sub-002_ses-pre_task-b_relmat.tsv │ │ └── sub-003 │ │ │ ├── ses-post │ │ │ └── func │ │ │ │ ├── sub-003_ses-post_task-a_relmat.tsv │ │ │ │ └── sub-003_ses-post_task-b_relmat.tsv │ │ │ └── ses-pre │ │ │ └── func │ │ │ ├── sub-003_ses-pre_task-a_relmat.tsv │ │ │ └── sub-003_ses-pre_task-b_relmat.tsv │ ├── example_edges.tsv │ └── example_nodes.tsv ├── plot.py ├── plotting │ ├── __init__.py │ ├── plot_cm.py │ ├── plot_dimarrows.py │ ├── plot_edges.py │ ├── plot_gif.py │ ├── plot_legend.py │ ├── plot_nodes.py │ ├── plot_parcels.py │ ├── plot_spheres.py │ ├── plot_springlayout.py │ ├── plot_templates.py │ ├── plot_title.py │ └── process_input.py ├── profiles │ └── default.json ├── templatesettings │ ├── __init__.py │ ├── surface_detection.py │ ├── template_get_kwargs.json │ └── templatesettings_glass.json └── utils │ ├── __init__.py │ ├── coloring.py │ ├── convert_formats.py │ ├── plot_utils.py │ ├── preset_views.py │ └── settings.py ├── pytest.ini ├── requirements.txt ├── setup.py └── tests ├── baseline ├── test_360.png ├── test_cloudytemplate.png ├── test_cm.png ├── test_cm_rotateoff.png ├── test_column_as_color.png ├── test_cont_colormap.png ├── test_customax.png ├── test_edges_df.png ├── test_filledtemplate.png ├── test_gif_plot.gif ├── test_glasstemplate.png ├── test_highlight_edges_df.png ├── test_highlight_edges_np.png ├── test_highlightedges_df.png ├── test_highlightedges_np.png ├── test_highlightnodes_str.png ├── test_labels.png ├── test_list_as_cm.png ├── test_networkx_input_plot.png ├── test_nodevminvmax.png ├── test_preset3.png ├── test_preset4.png ├── test_preset4s.png ├── test_preset6.png ├── test_preset6s.png ├── test_preset9.png ├── test_printlayout.png ├── test_printlayout_legend.png ├── test_simple.png ├── test_singlehemisphere.png ├── test_spheres.png ├── test_templateflow_atlas_highlight.png ├── test_templateflow_cohort.png └── test_templateflow_fromdict.png ├── test_cm.py ├── test_coloring.py ├── test_edgedf.py ├── test_errors.py ├── test_fromdata.py ├── test_fromtemplateflow.py ├── test_highlightedges.py ├── test_networkx.py ├── test_nodestyles.py ├── test_presetviews.py ├── test_springlayout.py ├── test_templates.py └── test_textlabels.py /.circleci/config.yml: 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