├── .gitignore ├── .pre-commit-config.yaml ├── LICENSE ├── README.md ├── prospectdataset ├── __init__.py ├── config.py ├── download.py ├── metrics.py ├── plots │ ├── __init__.py │ ├── levenshtein_distance.py │ ├── peaks_intensities.py │ ├── peaks_per_AA.py │ ├── peptides_charges_distribution.py │ ├── retention_time_distribution.py │ └── retention_time_prediction_density.py ├── process_intensity_data.py ├── scripts │ ├── __init__.py │ ├── filter_irt.py │ ├── merge_files.py │ └── shuffle_split.py └── version.py ├── requirements.txt ├── setup.py └── zenodo-README.md /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wilhelm-lab/PROSPECT/HEAD/.gitignore -------------------------------------------------------------------------------- /.pre-commit-config.yaml: -------------------------------------------------------------------------------- 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