├── CONCOMPRA.yml ├── CONCOMPRA_local_postprocessing.R ├── README.md ├── directory_list.txt ├── primer_set.fa └── scripts ├── cluster_pictures.sh ├── consensus_generation.sh ├── filterPAF_strict.py ├── kmer_umap_OPTICS.py ├── main.sh ├── merfePAF.py └── primer-chop ├── LICENSE ├── README.md └── bin ├── primer-chop └── primer-chop-analyze /CONCOMPRA.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/willem-stock/CONCOMPRA/HEAD/CONCOMPRA.yml -------------------------------------------------------------------------------- /CONCOMPRA_local_postprocessing.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/willem-stock/CONCOMPRA/HEAD/CONCOMPRA_local_postprocessing.R -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/willem-stock/CONCOMPRA/HEAD/README.md -------------------------------------------------------------------------------- /directory_list.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/willem-stock/CONCOMPRA/HEAD/directory_list.txt -------------------------------------------------------------------------------- /primer_set.fa: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/willem-stock/CONCOMPRA/HEAD/primer_set.fa -------------------------------------------------------------------------------- /scripts/cluster_pictures.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/willem-stock/CONCOMPRA/HEAD/scripts/cluster_pictures.sh -------------------------------------------------------------------------------- /scripts/consensus_generation.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/willem-stock/CONCOMPRA/HEAD/scripts/consensus_generation.sh -------------------------------------------------------------------------------- /scripts/filterPAF_strict.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/willem-stock/CONCOMPRA/HEAD/scripts/filterPAF_strict.py -------------------------------------------------------------------------------- /scripts/kmer_umap_OPTICS.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/willem-stock/CONCOMPRA/HEAD/scripts/kmer_umap_OPTICS.py -------------------------------------------------------------------------------- /scripts/main.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/willem-stock/CONCOMPRA/HEAD/scripts/main.sh -------------------------------------------------------------------------------- /scripts/merfePAF.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/willem-stock/CONCOMPRA/HEAD/scripts/merfePAF.py -------------------------------------------------------------------------------- /scripts/primer-chop/LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/willem-stock/CONCOMPRA/HEAD/scripts/primer-chop/LICENSE -------------------------------------------------------------------------------- /scripts/primer-chop/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/willem-stock/CONCOMPRA/HEAD/scripts/primer-chop/README.md -------------------------------------------------------------------------------- /scripts/primer-chop/bin/primer-chop: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/willem-stock/CONCOMPRA/HEAD/scripts/primer-chop/bin/primer-chop -------------------------------------------------------------------------------- /scripts/primer-chop/bin/primer-chop-analyze: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/willem-stock/CONCOMPRA/HEAD/scripts/primer-chop/bin/primer-chop-analyze --------------------------------------------------------------------------------