├── LICENSE ├── README.md ├── data └── 20240101 │ ├── mimic_abn │ └── triples.json │ └── mimic_cxr │ ├── temporal_ids.json │ └── triples.json ├── figure └── overview.png ├── pycocoevalcap ├── README.md ├── __init__.py ├── bleu │ ├── LICENSE │ ├── __init__.py │ ├── bleu.py │ └── bleu_scorer.py ├── cider │ ├── __init__.py │ ├── cider.py │ └── cider_scorer.py ├── eval.py ├── license.txt ├── meteor │ ├── __init__.py │ ├── data │ │ └── paraphrase-en.gz │ ├── meteor-1.5.jar │ └── meteor.py ├── rouge │ ├── __init__.py │ ├── __pycache__ │ │ ├── __init__.cpython-39.pyc │ │ └── rouge.cpython-39.pyc │ └── rouge.py └── tokenizer │ ├── __init__.py │ ├── ptbtokenizer.py │ └── stanford-corenlp-3.4.1.jar ├── script_stage1 ├── run_mimic_abn.sh └── run_mimic_cxr.sh ├── script_stage2 ├── run_mimic_abn.sh └── run_mimic_cxr.sh ├── src_preprocessing └── run_abn_preprocess.py ├── src_stage1 ├── __init__.py ├── chexbert_eval.py ├── data_arguments.py ├── data_collator_ende.py ├── data_process_ende.py ├── dataset_ende.py ├── graph_construction │ ├── __init__.py │ ├── constants.py │ ├── pmi_observation_entity.py │ ├── pmi_progression_entity.py │ ├── prepare_stat.py │ └── run_mimic_abn.sh ├── metrics.py ├── model_arguments.py ├── models │ ├── activations.py │ └── modeling_vit.py ├── optimizer.py ├── run_ende.py ├── seq2seqtrainer_metrics_ende.py ├── tokenizer.py └── train_eval_ende_full.py └── src_stage2 ├── __init__.py ├── chexbert_eval.py ├── data_arguments.py ├── data_collator_ende.py ├── data_process_ende.py ├── dataset_ende.py ├── metrics.py ├── model_arguments.py ├── models ├── activations.py ├── modeling_bart.py └── rgcn.py ├── optimizer.py ├── run_ende.py ├── seq2seqtrainer_metrics_ende.py ├── tokenizer.py └── train_eval_ende_full.py /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wjhou/Recap/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: 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