├── .Rbuildignore ├── .github └── workflows │ ├── check.yaml │ └── lint.yaml ├── .gitignore ├── .lintr ├── COPYRIGHT ├── DESCRIPTION ├── LICENSE ├── Makefile ├── NAMESPACE ├── NEWS.md ├── R ├── api.R ├── package.R ├── server.R ├── ui.R └── utils.R ├── README.Rmd ├── README.md ├── app.R ├── codecov.yml ├── deploy.sh ├── drakeplanner.Rproj ├── inst ├── README.md ├── WORDLIST └── defaults │ ├── functions.R │ └── plan.R ├── man ├── drake-package.Rd └── drakeplanner.Rd ├── manifest.json ├── shinyapps.R └── tests ├── testthat.R └── testthat ├── test-app.R └── test-script.R /.Rbuildignore: -------------------------------------------------------------------------------- 1 | ^\.lintr$ 2 | ^.*\.Rproj$ 3 | ^\.Rproj\.user$ 4 | app.R 5 | COPYRIGHT 6 | LICENSE 7 | Makefile 8 | rsconnect 9 | ^README\.Rmd$ 10 | ^\.travis\.yml$ 11 | ^codecov\.yml$ 12 | ^shinyapps\.R$ 13 | ^deploy.sh$ 14 | ^manifest.json$ 15 | -------------------------------------------------------------------------------- /.github/workflows/check.yaml: -------------------------------------------------------------------------------- 1 | on: [push, pull_request] 2 | 3 | name: check 4 | 5 | jobs: 6 | check: 7 | runs-on: ${{ matrix.config.os }} 8 | 9 | name: ${{ matrix.config.os }} (${{ matrix.config.r }}) 10 | 11 | strategy: 12 | fail-fast: false 13 | matrix: 14 | config: 15 | - {os: windows-latest, r: 'release'} 16 | - {os: macOS-latest, r: 'release'} 17 | - {os: ubuntu-16.04, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/xenial/latest"} 18 | 19 | env: 20 | R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 21 | RSPM: ${{ matrix.config.rspm }} 22 | GITHUB_PAT: ${{ secrets.GITHUBPAT }} 23 | 24 | steps: 25 | - uses: actions/checkout@v2 26 | 27 | - uses: r-lib/actions/setup-r@master 28 | with: 29 | r-version: ${{ matrix.config.r }} 30 | 31 | - uses: r-lib/actions/setup-pandoc@master 32 | 33 | - name: Query dependencies 34 | run: | 35 | install.packages('remotes') 36 | saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) 37 | shell: Rscript {0} 38 | 39 | - name: Cache R packages 40 | if: runner.os != 'Windows' 41 | uses: actions/cache@v1 42 | with: 43 | path: ${{ env.R_LIBS_USER }} 44 | key: ${{ runner.os }}-r-${{ matrix.config.r }}-1-${{ hashFiles('.github/depends.Rds') }} 45 | restore-keys: ${{ runner.os }}-r-${{ matrix.config.r }}-1- 46 | 47 | - name: Install system dependencies 48 | if: runner.os == 'Linux' 49 | env: 50 | RHUB_PLATFORM: linux-x86_64-ubuntu-gcc 51 | run: | 52 | Rscript -e "remotes::install_github('r-hub/sysreqs')" 53 | sysreqs=$(Rscript -e "cat(sysreqs::sysreq_commands('DESCRIPTION'))") 54 | sudo -s eval "$sysreqs" 55 | 56 | - name: Install dependencies 57 | run: | 58 | remotes::install_deps(dependencies = TRUE) 59 | remotes::install_cran("rcmdcheck") 60 | install.packages(".", type = "source", repos = NULL) 61 | shell: Rscript {0} 62 | 63 | - name: Check 64 | env: 65 | _R_CHECK_CRAN_INCOMING_REMOTE_: false 66 | _R_CHECK_FORCE_SUGGESTS_: false 67 | run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check") 68 | shell: Rscript {0} 69 | 70 | - name: Upload check results 71 | if: failure() 72 | uses: actions/upload-artifact@master 73 | with: 74 | name: ${{ runner.os }}-r${{ matrix.config.r }}-results 75 | path: check 76 | -------------------------------------------------------------------------------- /.github/workflows/lint.yaml: -------------------------------------------------------------------------------- 1 | on: [push, pull_request] 2 | 3 | name: lint 4 | 5 | jobs: 6 | lint: 7 | runs-on: macOS-latest 8 | env: 9 | GITHUB_PAT: ${{ secrets.GITHUBPAT }} 10 | steps: 11 | - uses: actions/checkout@v2 12 | 13 | - uses: r-lib/actions/setup-r@master 14 | 15 | - name: Query dependencies 16 | run: | 17 | install.packages('remotes') 18 | saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) 19 | shell: Rscript {0} 20 | 21 | - name: Cache R packages 22 | uses: actions/cache@v1 23 | with: 24 | path: ${{ env.R_LIBS_USER }} 25 | key: macOS-r-4.0-1-${{ hashFiles('.github/depends.Rds') }} 26 | restore-keys: macOS-r-4.0-1- 27 | 28 | - name: Install dependencies 29 | run: | 30 | install.packages(c("remotes")) 31 | remotes::install_deps(dependencies = TRUE) 32 | remotes::install_cran("lintr") 33 | shell: Rscript {0} 34 | 35 | - name: Lint 36 | run: | 37 | out <- lintr::lint_package() 38 | print(out) 39 | if (length(out)) stop("lints found") 40 | shell: Rscript {0} 41 | -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- 1 | .drake 2 | .Rproj.user 3 | .Rhistory 4 | .RData 5 | .Ruserdata 6 | *~ 7 | rsconnect 8 | -------------------------------------------------------------------------------- /.lintr: -------------------------------------------------------------------------------- 1 | linters: with_defaults( 2 | camel_case_linter = NULL, 3 | object_name_linter = NULL, 4 | object_usage_linter = NULL, 5 | snake_case_linter = NULL) 6 | -------------------------------------------------------------------------------- /COPYRIGHT: -------------------------------------------------------------------------------- 1 | Copyright Eli Lilly and Company 2 | -------------------------------------------------------------------------------- /DESCRIPTION: -------------------------------------------------------------------------------- 1 | Package: drakeplanner 2 | Title: Create and Visualize Drake Workflows 3 | Description: A Shiny app for creating and visualizing 4 | drake workflows () 5 | interactively. Simply supply a drake plan and supporting functions, 6 | and the app shows the dependency graph and assembles the pieces 7 | into a downloadable R script. Read about the details at 8 | . 9 | Version: 0.0.2 10 | License: GPL-3 11 | URL: https://github.com/wlandau/drakeplanner 12 | BugReports: https://github.com/wlandau/drakeplanner/issues 13 | Authors@R: c( 14 | person( 15 | family = "Landau", 16 | given = c("William", "Michael"), 17 | email = "will.landau@gmail.com", 18 | role = c("aut", "cre"), 19 | comment = c(ORCID = "0000-0003-1878-3253") 20 | ), 21 | person( 22 | family = "Eli Lilly and Company", 23 | role = "cph" 24 | )) 25 | Depends: 26 | R (>= 3.3.0), 27 | drake, 28 | tidyverse 29 | Imports: 30 | bs4Dash, 31 | DT, 32 | htmltools, 33 | shiny, 34 | shinyalert, 35 | shinyAce, 36 | shinycssloaders, 37 | storr, 38 | styler, 39 | visNetwork 40 | Suggests: 41 | covr, 42 | pkgload, 43 | remotes, 44 | rmarkdown, 45 | rsconnect, 46 | shinytest, 47 | testthat (>= 2.1.0) 48 | Remotes: 49 | ropensci/drake 50 | Encoding: UTF-8 51 | Language: en-US 52 | Roxygen: list(markdown = TRUE) 53 | RoxygenNote: 7.0.2 54 | -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- 1 | GNU GENERAL PUBLIC LICENSE 2 | Version 3, 29 June 2007 3 | 4 | Copyright (C) 2007 Free Software Foundation, Inc. 5 | Everyone is permitted to copy and distribute verbatim copies 6 | of this license document, but changing it is not allowed. 7 | 8 | Preamble 9 | 10 | The GNU General Public License is a free, copyleft license for 11 | software and other kinds of works. 12 | 13 | The licenses for most software and other practical works are designed 14 | to take away your freedom to share and change the works. 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Interpretation of Sections 15 and 16. 613 | 614 | If the disclaimer of warranty and limitation of liability provided 615 | above cannot be given local legal effect according to their terms, 616 | reviewing courts shall apply local law that most closely approximates 617 | an absolute waiver of all civil liability in connection with the 618 | Program, unless a warranty or assumption of liability accompanies a 619 | copy of the Program in return for a fee. 620 | 621 | END OF TERMS AND CONDITIONS 622 | 623 | How to Apply These Terms to Your New Programs 624 | 625 | If you develop a new program, and you want it to be of the greatest 626 | possible use to the public, the best way to achieve this is to make it 627 | free software which everyone can redistribute and change under these terms. 628 | 629 | To do so, attach the following notices to the program. It is safest 630 | to attach them to the start of each source file to most effectively 631 | state the exclusion of warranty; and each file should have at least 632 | the "copyright" line and a pointer to where the full notice is found. 633 | 634 | 635 | Copyright (C) 636 | 637 | This program is free software: you can redistribute it and/or modify 638 | it under the terms of the GNU General Public License as published by 639 | the Free Software Foundation, either version 3 of the License, or 640 | (at your option) any later version. 641 | 642 | This program is distributed in the hope that it will be useful, 643 | but WITHOUT ANY WARRANTY; without even the implied warranty of 644 | MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the 645 | GNU General Public License for more details. 646 | 647 | You should have received a copy of the GNU General Public License 648 | along with this program. If not, see . 649 | 650 | Also add information on how to contact you by electronic and paper mail. 651 | 652 | If the program does terminal interaction, make it output a short 653 | notice like this when it starts in an interactive mode: 654 | 655 | Copyright (C) 656 | This program comes with ABSOLUTELY NO WARRANTY; for details type `show w'. 657 | This is free software, and you are welcome to redistribute it 658 | under certain conditions; type `show c' for details. 659 | 660 | The hypothetical commands `show w' and `show c' should show the appropriate 661 | parts of the General Public License. Of course, your program's commands 662 | might be different; for a GUI interface, you would use an "about box". 663 | 664 | You should also get your employer (if you work as a programmer) or school, 665 | if any, to sign a "copyright disclaimer" for the program, if necessary. 666 | For more information on this, and how to apply and follow the GNU GPL, see 667 | . 668 | 669 | The GNU General Public License does not permit incorporating your program 670 | into proprietary programs. If your program is a subroutine library, you 671 | may consider it more useful to permit linking proprietary applications with 672 | the library. If this is what you want to do, use the GNU Lesser General 673 | Public License instead of this License. But first, please read 674 | . 675 | -------------------------------------------------------------------------------- /Makefile: -------------------------------------------------------------------------------- 1 | all: inst/README.md 2 | 3 | inst/README.md: README.md 4 | cp README.md inst/README.md 5 | 6 | README.md: README.Rmd 7 | Rscript -e 'rmarkdown::render("README.Rmd", output_format = "github_document")' 8 | rm -rf README.html 9 | 10 | clean: 11 | rm -rf README.html README.md inst/README.md 12 | -------------------------------------------------------------------------------- /NAMESPACE: -------------------------------------------------------------------------------- 1 | # Generated by roxygen2: do not edit by hand 2 | 3 | export(drakeplanner) 4 | import(drake) 5 | import(styler) 6 | import(tidyverse) 7 | importFrom(DT,dataTableOutput) 8 | importFrom(DT,renderDataTable) 9 | importFrom(bs4Dash,bs4Card) 10 | importFrom(bs4Dash,bs4DashBody) 11 | importFrom(bs4Dash,bs4DashNavbar) 12 | importFrom(bs4Dash,bs4DashPage) 13 | importFrom(bs4Dash,bs4DashSidebar) 14 | importFrom(bs4Dash,bs4SidebarMenu) 15 | importFrom(bs4Dash,bs4SidebarMenuItem) 16 | importFrom(bs4Dash,bs4Sortable) 17 | importFrom(bs4Dash,bs4TabItem) 18 | importFrom(bs4Dash,bs4TabItems) 19 | importFrom(htmltools,tags) 20 | importFrom(shiny,actionButton) 21 | importFrom(shiny,column) 22 | importFrom(shiny,downloadButton) 23 | importFrom(shiny,downloadHandler) 24 | importFrom(shiny,fluidRow) 25 | importFrom(shiny,reactiveValues) 26 | importFrom(shiny,renderText) 27 | importFrom(shiny,shinyApp) 28 | importFrom(shiny,verbatimTextOutput) 29 | importFrom(shinyAce,aceEditor) 30 | importFrom(shinyalert,useShinyalert) 31 | importFrom(shinycssloaders,withSpinner) 32 | importFrom(storr,storr_environment) 33 | importFrom(visNetwork,renderVisNetwork) 34 | importFrom(visNetwork,visNetworkOutput) 35 | -------------------------------------------------------------------------------- /NEWS.md: -------------------------------------------------------------------------------- 1 | # Version 0.0.2 2 | 3 | * Update for current `drake` 7.10.0.9000 (`config`-less API functions without excessive format checks). 4 | * Gracefully handle errors at the `vis_drake_graph()` level. 5 | * Temporarily disable `shinytest` suite (#7). 6 | 7 | # Version 0.0.1 8 | 9 | * First version 10 | -------------------------------------------------------------------------------- /R/api.R: -------------------------------------------------------------------------------- 1 | #' @title Launch the drake planner 2 | #' @description Launch an interactive web application for 3 | #' creating and visualizing `drake` workflows. 4 | #' @export 5 | #' @examples 6 | #' \dontrun{ 7 | #' drakeplanner() 8 | #' } 9 | drakeplanner <- function() { 10 | shiny::shinyApp(ui = ui(), server = server) 11 | } 12 | -------------------------------------------------------------------------------- /R/package.R: -------------------------------------------------------------------------------- 1 | #' drakeplanner: An R/Shiny app to create and visualize `drake` workflows. 2 | #' @docType package 3 | #' @description `drakeplanner` is an package and R/Shiny app 4 | #' for creating and visualizing `drake` workflows. 5 | #' @name drake-package 6 | #' @aliases drake 7 | #' @author William Michael Landau \email{will.landau@@gmail.com} 8 | #' @examples 9 | #' \dontrun{ 10 | #' drakeplanner() 11 | #' } 12 | #' @references 13 | #' @import drake styler tidyverse 14 | #' @importFrom bs4Dash bs4Card bs4DashBody bs4DashSidebar bs4SidebarMenu 15 | #' bs4DashNavbar bs4DashPage bs4SidebarMenu bs4SidebarMenuItem bs4Sortable 16 | #' bs4TabItem bs4TabItems 17 | #' @importFrom DT dataTableOutput renderDataTable 18 | #' @importFrom htmltools tags 19 | #' @importFrom shiny actionButton column downloadHandler downloadButton fluidRow 20 | #' reactiveValues renderText shinyApp verbatimTextOutput 21 | #' @importFrom shinyalert useShinyalert 22 | #' @importFrom shinyAce aceEditor 23 | #' @importFrom shinycssloaders withSpinner 24 | #' @importFrom storr storr_environment 25 | #' @importFrom visNetwork renderVisNetwork visNetworkOutput 26 | NULL 27 | -------------------------------------------------------------------------------- /R/server.R: -------------------------------------------------------------------------------- 1 | server <- function(input, output, session) { 2 | values <- shiny::reactiveValues() 3 | shiny::observeEvent( 4 | input$update, 5 | values <- update_values(values, input), 6 | ignoreNULL = FALSE 7 | ) 8 | output$table <- DT::renderDataTable( 9 | deparse_plan(values$plan), 10 | rownames = FALSE 11 | ) 12 | output$source <- shiny::renderText(drake_source(values$plan)) 13 | output$graph <- visNetwork::renderVisNetwork(values$graph) 14 | output$download <- shiny::downloadHandler( 15 | filename = function() { 16 | paste("drake-", Sys.Date(), ".R", sep = "") 17 | }, 18 | content = function(con) { 19 | writeLines(drake_script(input), con) 20 | } 21 | ) 22 | } 23 | -------------------------------------------------------------------------------- /R/ui.R: -------------------------------------------------------------------------------- 1 | ui <- function() { 2 | ui_plan <- bs4Dash::bs4TabItem( 3 | tabName = "plan", 4 | shinyalert::useShinyalert(), 5 | htmltools::tags$head( 6 | htmltools::tags$style("#source{overflow-y:scroll; max-height: 400px;}") 7 | ), 8 | shiny::fluidRow( 9 | shiny::column( 10 | 6, 11 | bs4Dash::bs4Sortable( 12 | width = 12, 13 | bs4Dash::bs4Card( 14 | title = "Control", 15 | width = 12, 16 | status = "primary", 17 | closable = FALSE, 18 | shiny::actionButton( 19 | "update", 20 | "Update", 21 | icon = shiny::icon("redo-alt") 22 | ), 23 | shiny::downloadButton("download", "Download") 24 | ), 25 | bs4Dash::bs4Card( 26 | title = "Plan", 27 | width = 12, 28 | status = "primary", 29 | closable = FALSE, 30 | shinyAce::aceEditor( 31 | "plan", 32 | default_text("plan.R"), 33 | fontSize = 14, 34 | tabSize = 2 35 | ), 36 | shiny::textOutput("plan_warnings") 37 | ), 38 | bs4Dash::bs4Card( 39 | title = "Functions", 40 | width = 12, 41 | status = "primary", 42 | closable = FALSE, 43 | shinyAce::aceEditor( 44 | "functions", 45 | default_text("functions.R"), 46 | fontSize = 14, 47 | tabSize = 2 48 | ) 49 | ) 50 | ) 51 | ), 52 | shiny::column( 53 | 6, 54 | bs4Dash::bs4Sortable( 55 | width = 12, 56 | bs4Dash::bs4Card( 57 | title = "Graph", 58 | width = 12, 59 | status = "success", 60 | closable = FALSE, 61 | shinycssloaders::withSpinner(visNetwork::visNetworkOutput("graph")) 62 | ), 63 | bs4Dash::bs4Card( 64 | title = "Table", 65 | width = 12, 66 | status = "success", 67 | closable = FALSE, 68 | shinycssloaders::withSpinner(DT::dataTableOutput("table")) 69 | ), 70 | bs4Dash::bs4Card( 71 | title = "Source", 72 | width = 12, 73 | status = "success", 74 | closable = FALSE, 75 | shinycssloaders::withSpinner(shiny::verbatimTextOutput("source")) 76 | ) 77 | ) 78 | ) 79 | ) 80 | ) 81 | 82 | ui_usage <- bs4Dash::bs4TabItem( 83 | tabName = "usage", 84 | bs4Dash::bs4Card( 85 | title = "Usage", 86 | width = 12, 87 | status = "success", 88 | closable = FALSE, 89 | shiny::includeMarkdown( 90 | system.file("README.md", package = "drakeplanner", mustWork = TRUE) 91 | ) 92 | ) 93 | ) 94 | 95 | ui_body <- bs4Dash::bs4DashBody( 96 | bs4Dash::bs4TabItems( 97 | ui_plan, 98 | ui_usage 99 | ) 100 | ) 101 | 102 | ui_sidebar <- bs4Dash::bs4DashSidebar( 103 | skin = "light", 104 | status = "primary", 105 | brandColor = "primary", 106 | title = "drakeplanner", 107 | bs4Dash::bs4SidebarMenu( 108 | bs4Dash::bs4SidebarMenuItem( 109 | "Plan", 110 | tabName = "plan", 111 | icon = "project-diagram" 112 | ), 113 | bs4Dash::bs4SidebarMenuItem( 114 | "Usage", 115 | tabName = "usage", 116 | icon = "book-reader" 117 | ) 118 | ) 119 | ) 120 | 121 | bs4Dash::bs4DashPage( 122 | title = " drakeplanner", 123 | body = ui_body, 124 | navbar = bs4Dash::bs4DashNavbar(controlbarIcon = NULL), 125 | sidebar = ui_sidebar 126 | ) 127 | } 128 | -------------------------------------------------------------------------------- /R/utils.R: -------------------------------------------------------------------------------- 1 | update_values <- function(values, input) { 2 | envir <- new.env(parent = globalenv()) 3 | for (pkg in c("drake", "tidyverse")) { 4 | parse_input(sprintf("require(%s)", pkg), envir) #"Depends:" is not enough. 5 | } 6 | plan <- parse_input(input$plan, envir, "Plan") 7 | if (identical(plan, "error")) { 8 | return() 9 | } 10 | values$plan <- plan 11 | out <- parse_input(input$functions, envir, "Functions") 12 | if (identical(out, "error")) { 13 | return() 14 | } 15 | values$graph <- resolve_graph(values$plan, envir) 16 | invisible() 17 | } 18 | 19 | parse_input <- function(text, envir, type) { 20 | with_handling(eval(parse(text = text), envir = envir), type = type) 21 | } 22 | 23 | resolve_graph <- function(plan, envir) { 24 | with_handling(resolve_graph_impl(plan, envir), type = "graph") 25 | } 26 | 27 | resolve_graph_impl <- function(plan, envir) { 28 | info <- drake::drake_graph_info( 29 | plan = plan, 30 | envir = envir, 31 | cache = storr::storr_environment(), 32 | session_info = FALSE, 33 | history = FALSE, 34 | hover = TRUE 35 | ) 36 | relabel <- info$nodes$status == "missing" 37 | info$nodes$status[relabel] <- "imported" 38 | info$nodes$color[relabel] <- "#1874CD" 39 | info$legend_nodes <- info$legend_nodes[info$legend_nodes$label != "Missing", ] 40 | drake::render_drake_graph( 41 | info, 42 | main = "", 43 | hover = TRUE, 44 | width = "100%" 45 | ) 46 | } 47 | 48 | with_handling <- function(code, type) { 49 | tryCatch( 50 | withCallingHandlers( 51 | code, 52 | warning = function(w) { 53 | shinyalert::shinyalert( 54 | paste(type, "warning"), 55 | w$message, 56 | type = "warning" 57 | ) 58 | "warning" 59 | } 60 | ), 61 | error = function(e) { 62 | shinyalert::shinyalert( 63 | paste(type, "error"), 64 | e$message, 65 | type = "error" 66 | ) 67 | "error" 68 | } 69 | ) 70 | } 71 | 72 | default_text <- function(file) { 73 | path <- file.path("defaults", file) 74 | path <- system.file(path, package = "drakeplanner", mustWork = TRUE) 75 | lines <- readLines(path) 76 | paste(lines, collapse = "\n") 77 | } 78 | 79 | deparse_commands <- function(x) { 80 | unlist(lapply(x, safe_deparse, collapse = " ")) 81 | } 82 | 83 | deparse_plan <- function(plan) { 84 | plan$command <- deparse_commands(plan$command) 85 | plan 86 | } 87 | 88 | drake_script <- function(input) { 89 | plan_text <- input$plan 90 | plan_text[1] <- paste("plan <-", plan_text[1]) 91 | c( 92 | "# This R script sets up and runs a drake workflow.", 93 | "# Visit https://ropenscilabs.github.io/drake-manual/projects.html", 94 | "# for advice on splitting the code into multiple files.", 95 | "", 96 | "# First, load your packages. Feel free to add more.", 97 | "library(drake)", 98 | "", 99 | "# Next, define your functions.", 100 | input$functions, 101 | "", 102 | "# And create your drake plan.", 103 | plan_text, 104 | "", 105 | "# Finally, run your workflow.", 106 | "make(plan)", 107 | "", 108 | "# You can visualize your plan and workflow.", 109 | "# vis_drake_graph(plan, hover = TRUE)", 110 | "", 111 | "# And you can load targets from the cache with loadd() and readd()." 112 | ) 113 | } 114 | 115 | drake_source <- function(plan) { 116 | paste(drake::drake_plan_source(plan), collapse = "\n") 117 | } 118 | 119 | safe_deparse <- function(x, collapse = "\n") { 120 | paste(deparse(x, control = c("keepInteger", "keepNA")), collapse = collapse) 121 | } 122 | -------------------------------------------------------------------------------- /README.Rmd: -------------------------------------------------------------------------------- 1 | --- 2 | output: github_document 3 | --- 4 | 5 | superseded lifecycle 6 | 7 | ## Consider `targets` 8 | 9 | `drake` is [superseded](https://www.tidyverse.org/lifecycle/#superseded). The [`targets`](https://docs.ropensci.org/targets/) R package is the long-term successor of `drake`, and it is more robust and easier to use. Please visit for full context and advice on transitioning. The counterpart of `drakeplanner` in `targets` is `targetsketch`: . 10 | 11 | # drakeplanner 12 | 13 | This R/Shiny app is a companion to the [`drake`](https://github.com/ropensci/drake) R package. It helps new users learn [`drake`](https://github.com/ropensci/drake), and it helps new and experienced users set up new [`drake`](https://github.com/ropensci/drake)-powered projects. Simply provide a [`drake` plan](https://books.ropensci.org/drake/plans.html), and `drakeplanner` will show you the end-to-end dependency graph of your workflow and produce a downloadable R script to get your project started. 14 | 15 | # Access 16 | 17 | This app is available online at [https://wlandau.shinyapps.io/drakeplanner](https://wlandau.shinyapps.io/drakeplanner). If you cannot access it, you can install it locally in an R session. 18 | 19 | ```{r, eval = FALSE} 20 | install.packages("remotes") 21 | remotes::install_github("wlandau/drakeplanner") 22 | ``` 23 | 24 | Then run it on your own machine. 25 | 26 | ```{r, eval = FALSE} 27 | drakeplanner::drakeplanner() 28 | ``` 29 | 30 | # Usage 31 | 32 | 1. Navigate to the `Plan` view (left sidebar). 33 | 2. Write your [`drake` plan](https://books.ropensci.org/drake/plans.html) in the `Plan` box. The code must return a valid `drake` plan at the end, ideally with a call to the [`drake_plan()`](https://ropensci.github.io/drake/reference/drake_plan.html) function. 34 | 3. Write your [custom functions](https://books.ropensci.org/drake/plans.html) in the `Functions` box. 35 | 4. Click `Update` button in the `Control` box. 36 | 5. Optional: click the `Download` button in the `Control` box to save your workflow as an R script. 37 | 38 | # Tips 39 | 40 | - For smaller graphs and faster rendering times, consider setting the `max_expand` argument of [`drake_plan()`](https://ropensci.github.io/drake/reference/drake_plan.html) to a small number for testing and debugging purposes. 41 | -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- 1 | superseded lifecycle 2 | 3 | ## Consider `targets` 4 | 5 | `drake` is [superseded](https://www.tidyverse.org/lifecycle/#superseded). The [`targets`](https://docs.ropensci.org/targets/) R package is the long-term successor of `drake`, and it is more robust and easier to use. Please visit for full context and advice on transitioning. The counterpart of `drakeplanner` in `targets` is `targetsketch`: . 6 | 7 | # drakeplanner 8 | 9 | This R/Shiny app is a companion to the 10 | [`drake`](https://github.com/ropensci/drake) R package. It helps new 11 | users learn [`drake`](https://github.com/ropensci/drake), and it helps 12 | new and experienced users set up new 13 | [`drake`](https://github.com/ropensci/drake)-powered projects. Simply 14 | provide a [`drake` plan](https://books.ropensci.org/drake/plans.html), 15 | and `drakeplanner` will show you the end-to-end dependency graph of your 16 | workflow and produce a downloadable R script to get your project 17 | started. 18 | 19 | # Access 20 | 21 | This app is available online at 22 | . If you cannot access it, 23 | you can install it locally in an R session. 24 | 25 | ``` r 26 | install.packages("remotes") 27 | remotes::install_github("wlandau/drakeplanner") 28 | ``` 29 | 30 | Then run it on your own machine. 31 | 32 | ``` r 33 | drakeplanner::drakeplanner() 34 | ``` 35 | 36 | # Usage 37 | 38 | 1. Navigate to the `Plan` view (left sidebar). 39 | 2. Write your [`drake` 40 | plan](https://books.ropensci.org/drake/plans.html) in the `Plan` 41 | box. The code must return a valid `drake` plan at the end, ideally 42 | with a call to the 43 | [`drake_plan()`](https://ropensci.github.io/drake/reference/drake_plan.html) 44 | function. 45 | 3. Write your [custom 46 | functions](https://books.ropensci.org/drake/plans.html) in the 47 | `Functions` box. 48 | 4. Click `Update` button in the `Control` box. 49 | 5. Optional: click the `Download` button in the `Control` box to save 50 | your workflow as an R script. 51 | 52 | # Tips 53 | 54 | - For smaller graphs and faster rendering times, consider setting the 55 | `max_expand` argument of 56 | [`drake_plan()`](https://ropensci.github.io/drake/reference/drake_plan.html) 57 | to a small number for testing and debugging purposes. 58 | -------------------------------------------------------------------------------- /app.R: -------------------------------------------------------------------------------- 1 | pkgload::load_all() 2 | drakeplanner() 3 | -------------------------------------------------------------------------------- /codecov.yml: -------------------------------------------------------------------------------- 1 | comment: false 2 | 3 | coverage: 4 | status: 5 | project: 6 | default: 7 | target: auto 8 | threshold: 1% 9 | patch: 10 | default: 11 | target: auto 12 | threshold: 1% 13 | -------------------------------------------------------------------------------- /deploy.sh: -------------------------------------------------------------------------------- 1 | #!/bin/bash 2 | echo "Environment variables:" 3 | echo " PATH: ${PATH}" 4 | echo " TRAVIS_BRANCH: ${TRAVIS_BRANCH}" 5 | echo " TRAVIS_PULL_REQUEST: ${TRAVIS_PULL_REQUEST}" 6 | echo " TRAVIS_PULL_REQUEST_BRANCH: ${TRAVIS_PULL_REQUEST_BRANCH}" 7 | if [[ "${TRAVIS_BRANCH}" == "main" && "${TRAVIS_PULL_REQUEST}" == "false" ]] 8 | then 9 | echo "Deploying to shinyapps.io." 10 | Rscript shinyapps.R 11 | fi 12 | -------------------------------------------------------------------------------- /drakeplanner.Rproj: -------------------------------------------------------------------------------- 1 | Version: 1.0 2 | 3 | RestoreWorkspace: Default 4 | SaveWorkspace: Default 5 | AlwaysSaveHistory: Default 6 | 7 | EnableCodeIndexing: Yes 8 | UseSpacesForTab: Yes 9 | NumSpacesForTab: 2 10 | Encoding: UTF-8 11 | 12 | RnwWeave: Sweave 13 | LaTeX: pdfLaTeX 14 | 15 | BuildType: Package 16 | PackageUseDevtools: Yes 17 | PackageInstallArgs: --no-multiarch --with-keep.source 18 | -------------------------------------------------------------------------------- /inst/README.md: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | [![experimental](https://img.shields.io/badge/stability-experimental-orange.svg)](https://github.com/orangemug/stability-badges#experimental) 5 | [![Travis build 6 | status](https://travis-ci.org/wlandau/drakeplanner.svg?branch=main)](https://travis-ci.org/wlandau/drakeplanner) 7 | [![Codecov test 8 | coverage](https://codecov.io/gh/wlandau/drakeplanner/branch/main/graph/badge.svg)](https://codecov.io/gh/wlandau/drakeplanner?branch=main) 9 | 10 | # drakeplanner 11 | 12 | This R/Shiny app is a companion to the 13 | [`drake`](https://github.com/ropensci/drake) R package. It helps new 14 | users learn [`drake`](https://github.com/ropensci/drake), and it helps 15 | new and experienced users set up new 16 | [`drake`](https://github.com/ropensci/drake)-powered projects. Simply 17 | provide a [`drake` plan](https://books.ropensci.org/drake/plans.html), 18 | and `drakeplanner` will show you the end-to-end dependency graph of your 19 | workflow and produce a downloadable R script to get your project 20 | started. 21 | 22 | # Access 23 | 24 | This app is available online at 25 | . If you cannot access it, 26 | you can install it locally in an R session. 27 | 28 | ``` r 29 | install.packages("remotes") 30 | remotes::install_github("wlandau/drakeplanner") 31 | ``` 32 | 33 | Then run it on your own machine. 34 | 35 | ``` r 36 | drakeplanner::drakeplanner() 37 | ``` 38 | 39 | # Usage 40 | 41 | 1. Navigate to the `Plan` view (left sidebar). 42 | 2. Write your [`drake` 43 | plan](https://books.ropensci.org/drake/plans.html) in the `Plan` 44 | box. The code must return a valid `drake` plan at the end, ideally 45 | with a call to the 46 | [`drake_plan()`](https://ropensci.github.io/drake/reference/drake_plan.html) 47 | function. 48 | 3. Write your [custom 49 | functions](https://books.ropensci.org/drake/plans.html) in the 50 | `Functions` box. 51 | 4. Click `Update` button in the `Control` box. 52 | 5. Optional: click the `Download` button in the `Control` box to save 53 | your workflow as an R script. 54 | 55 | # Tips 56 | 57 | - For smaller graphs and faster rendering times, consider setting the 58 | `max_expand` argument of 59 | [`drake_plan()`](https://ropensci.github.io/drake/reference/drake_plan.html) 60 | to a small number for testing and debugging purposes. 61 | -------------------------------------------------------------------------------- /inst/WORDLIST: -------------------------------------------------------------------------------- 1 | Codecov 2 | github 3 | https 4 | io 5 | md 6 | README 7 | ropensci 8 | shinyapps 9 | wlandau 10 | -------------------------------------------------------------------------------- /inst/defaults/functions.R: -------------------------------------------------------------------------------- 1 | # From https://github.com/wlandau/drake-examples/blob/main/mtcars/R/functions.R # nolint 2 | 3 | # Pick a random subset of n rows from a dataset 4 | random_rows <- function(data, n) { 5 | data[sample.int(n = nrow(data), size = n, replace = TRUE), ] 6 | } 7 | 8 | # Bootstrapped datasets from mtcars. 9 | simulate <- function(n) { 10 | # Pick a random set of cars to bootstrap from the mtcars data. 11 | data <- random_rows(data = mtcars, n = n) 12 | 13 | # x is the car's weight, and y is the fuel efficiency. 14 | data.frame( 15 | x = data$wt, 16 | y = data$mpg 17 | ) 18 | } 19 | 20 | # Try a couple different regression models. 21 | 22 | # Is fuel efficiency linearly related to weight? 23 | reg1 <- function(d) { 24 | lm(y ~ + x, data = d) 25 | } 26 | 27 | # Is fuel efficiency related to the SQUARE of the weight? 28 | reg2 <- function(d) { 29 | d$x2 <- d$x ^ 2 30 | lm(y ~ x2, data = d) 31 | } 32 | -------------------------------------------------------------------------------- /inst/defaults/plan.R: -------------------------------------------------------------------------------- 1 | # From https://github.com/wlandau/drake-examples/blob/main/mtcars/R/plan.R # nolint 2 | 3 | drake_plan( 4 | small = simulate(48), 5 | large = simulate(64), 6 | regression1 = target( 7 | reg1(data), 8 | transform = map(data = c(small, large), .tag_out = reg) 9 | ), 10 | regression2 = target( 11 | reg2(data), 12 | transform = map(data, .tag_out = reg) 13 | ), 14 | summ = target( 15 | suppressWarnings(summary(reg$residuals)), 16 | transform = map(reg) 17 | ), 18 | coef = target( 19 | suppressWarnings(summary(reg))$coefficients, 20 | transform = map(reg) 21 | ) 22 | ) 23 | -------------------------------------------------------------------------------- /man/drake-package.Rd: -------------------------------------------------------------------------------- 1 | % Generated by roxygen2: do not edit by hand 2 | % Please edit documentation in R/package.R 3 | \docType{package} 4 | \name{drake-package} 5 | \alias{drake-package} 6 | \alias{drake} 7 | \title{drakeplanner: An R/Shiny app to create and visualize \code{drake} workflows.} 8 | \description{ 9 | \code{drakeplanner} is an package and R/Shiny app 10 | for creating and visualizing \code{drake} workflows. 11 | } 12 | \examples{ 13 | \dontrun{ 14 | drakeplanner() 15 | } 16 | } 17 | \references{ 18 | \url{https://github.com/wlandau/drakeplanner} 19 | } 20 | \author{ 21 | William Michael Landau \email{will.landau@gmail.com} 22 | } 23 | -------------------------------------------------------------------------------- /man/drakeplanner.Rd: -------------------------------------------------------------------------------- 1 | % Generated by roxygen2: do not edit by hand 2 | % Please edit documentation in R/api.R 3 | \name{drakeplanner} 4 | \alias{drakeplanner} 5 | \title{Launch the drake planner} 6 | \usage{ 7 | drakeplanner() 8 | } 9 | \description{ 10 | Launch an interactive web application for 11 | creating and visualizing \code{drake} workflows. 12 | } 13 | \examples{ 14 | \dontrun{ 15 | drakeplanner() 16 | } 17 | } 18 | -------------------------------------------------------------------------------- /shinyapps.R: -------------------------------------------------------------------------------- 1 | library(rsconnect) 2 | remotes::install_github("wlandau/drakeplanner") 3 | message("Setting account info.") 4 | setAccountInfo( 5 | name = Sys.getenv("shinyapps_name"), 6 | token = Sys.getenv("shinyapps_token"), 7 | secret = Sys.getenv("shinyapps_secret") 8 | ) 9 | message("Deploying to shinyapps.io.") 10 | deployApp( 11 | appDir = file.path("tests", "apps", "drakeplanner"), 12 | appName = "drakeplanner" 13 | ) 14 | -------------------------------------------------------------------------------- /tests/testthat.R: -------------------------------------------------------------------------------- 1 | library(drakeplanner) 2 | library(testthat) 3 | 4 | test_check("drakeplanner") 5 | -------------------------------------------------------------------------------- /tests/testthat/test-app.R: -------------------------------------------------------------------------------- 1 | context("app") 2 | 3 | test_that("drakeplanner()", { 4 | skip_on_cran() 5 | skip("stderr is not a pipe errors likely from shinytest") 6 | shinytest::expect_pass( 7 | shinytest::testApp("../apps/drakeplanner/", compareImages = FALSE) 8 | ) 9 | }) 10 | -------------------------------------------------------------------------------- /tests/testthat/test-script.R: -------------------------------------------------------------------------------- 1 | context("script") 2 | 3 | test_that("script", { 4 | input <- list( 5 | plan = default_text("plan.R"), 6 | functions = default_text("functions.R") 7 | ) 8 | lines <- drake_script(input) 9 | file <- tempfile() 10 | writeLines(lines, file) 11 | dir <- tempfile() 12 | dir.create(dir) 13 | old <- setwd(dir) # nolint 14 | on.exit(setwd(old)) 15 | source(file) 16 | out <- sort(drake::cached()) 17 | exp <- c( 18 | "coef_regression1_large", 19 | "coef_regression1_small", 20 | "coef_regression2_large", 21 | "coef_regression2_small", 22 | "large", 23 | "regression1_large", 24 | "regression1_small", 25 | "regression2_large", 26 | "regression2_small", 27 | "small", 28 | "summ_regression1_large", 29 | "summ_regression1_small", 30 | "summ_regression2_large", 31 | "summ_regression2_small" 32 | ) 33 | exp <- sort(exp) 34 | expect_identical(out, exp) 35 | }) 36 | --------------------------------------------------------------------------------