├── LICENSE ├── MANIFEST.in ├── README.rst ├── champ ├── PartitionEnsemble.py ├── __init__.py ├── _version.py ├── champ_functions.py ├── leiden_ext.py ├── louvain_ext.py ├── parameter_estimation.py ├── plot_domains.py ├── test_champ.py ├── test_gamma_estimation.py └── test_louvain_ext.py ├── champ_matlab ├── createhalfspacesfromarray.m ├── dualizeintersection.m ├── getinteriorpoint.m ├── getintersection.m ├── getrandomhalfspaces.m ├── halfspaceintersection.m └── plot2ddomains.m ├── dist └── champ-1.0-py2.7.egg ├── docs ├── Makefile ├── _build │ ├── doctrees │ │ ├── environment.pickle │ │ └── index.doctree │ └── html │ │ ├── .buildinfo │ │ ├── .nojekyll │ │ ├── _images │ │ ├── 3dplanes_example.jpg │ │ ├── dom_weighted_nmi_senate.png │ │ ├── example_2d.jpg │ │ ├── graphs_all_three.png │ │ └── mod_map_AF.png │ │ ├── _sources │ │ └── index.txt │ │ ├── genindex.html │ │ ├── index.html │ │ ├── objects.inv │ │ ├── search.html │ │ └── searchindex.js ├── conf.py ├── index.rst ├── requirements.txt └── sub_docs │ ├── .DS_Store │ ├── biblio.bib │ ├── champ.bib │ ├── images │ ├── 3dplanes_example.jpg │ ├── dom_weighted_nmi_senate.png │ ├── example_2d.jpg │ ├── example_nmi.png │ ├── example_sl.png │ ├── graphs_all_old.pdf │ ├── graphs_all_old.png │ ├── graphs_all_three.png │ ├── mod_map_AF.png │ ├── part_ens_exp.png │ ├── random_comp.png │ └── runtime_ex.png │ ├── intro.rst │ ├── louvain_ext.rst │ ├── plotting2.rst │ ├── random_comp.png │ └── running.rst ├── example_notebook.tar.gz ├── setup.cfg ├── setup.py └── test └── test_champ.py /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wweir827/CHAMP/HEAD/LICENSE -------------------------------------------------------------------------------- /MANIFEST.in: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /README.rst: 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