├── .idea ├── TumorSegmentation.iml ├── deployment.xml ├── dictionaries │ └── jianghui.xml ├── encodings.xml ├── inspectionProfiles │ └── Project_Default.xml ├── misc.xml ├── modules.xml ├── vcs.xml └── webServers.xml ├── README ├── config ├── __init__.py └── configuration.py ├── data ├── __init__.py ├── dataset.py ├── dataset2.py └── val_volumes_list.txt ├── loss ├── DiceLoss.py ├── FocalLoss.py ├── LovaszLoss.py ├── TverskyLoss.py └── __init__.py ├── models ├── BasicModule.py ├── CascadeResUNet.py ├── DenseUNet.py ├── DilatedDenseUNet.py ├── NaiveUNet.py ├── ResUNet.py ├── UNet3D.py └── __init__.py ├── preprocess_dataset.py ├── preprocess_liver_seg.py ├── preprocess_tumor_seg.py ├── train.py ├── train_cascade_net.py ├── utils ├── __init__.py └── visualize.py ├── val_cascade_net.py ├── val_liver_net.py └── val_tumor_net.py /.idea/TumorSegmentation.iml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wxr521314/TumorSegmentation/HEAD/.idea/TumorSegmentation.iml -------------------------------------------------------------------------------- /.idea/deployment.xml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wxr521314/TumorSegmentation/HEAD/.idea/deployment.xml -------------------------------------------------------------------------------- /.idea/dictionaries/jianghui.xml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wxr521314/TumorSegmentation/HEAD/.idea/dictionaries/jianghui.xml -------------------------------------------------------------------------------- /.idea/encodings.xml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wxr521314/TumorSegmentation/HEAD/.idea/encodings.xml -------------------------------------------------------------------------------- /.idea/inspectionProfiles/Project_Default.xml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wxr521314/TumorSegmentation/HEAD/.idea/inspectionProfiles/Project_Default.xml -------------------------------------------------------------------------------- /.idea/misc.xml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wxr521314/TumorSegmentation/HEAD/.idea/misc.xml -------------------------------------------------------------------------------- /.idea/modules.xml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wxr521314/TumorSegmentation/HEAD/.idea/modules.xml -------------------------------------------------------------------------------- /.idea/vcs.xml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wxr521314/TumorSegmentation/HEAD/.idea/vcs.xml -------------------------------------------------------------------------------- /.idea/webServers.xml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wxr521314/TumorSegmentation/HEAD/.idea/webServers.xml -------------------------------------------------------------------------------- /README: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wxr521314/TumorSegmentation/HEAD/README -------------------------------------------------------------------------------- /config/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wxr521314/TumorSegmentation/HEAD/config/__init__.py -------------------------------------------------------------------------------- /config/configuration.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wxr521314/TumorSegmentation/HEAD/config/configuration.py -------------------------------------------------------------------------------- /data/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wxr521314/TumorSegmentation/HEAD/data/__init__.py -------------------------------------------------------------------------------- /data/dataset.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wxr521314/TumorSegmentation/HEAD/data/dataset.py -------------------------------------------------------------------------------- /data/dataset2.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wxr521314/TumorSegmentation/HEAD/data/dataset2.py -------------------------------------------------------------------------------- /data/val_volumes_list.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wxr521314/TumorSegmentation/HEAD/data/val_volumes_list.txt -------------------------------------------------------------------------------- /loss/DiceLoss.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wxr521314/TumorSegmentation/HEAD/loss/DiceLoss.py -------------------------------------------------------------------------------- /loss/FocalLoss.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wxr521314/TumorSegmentation/HEAD/loss/FocalLoss.py -------------------------------------------------------------------------------- /loss/LovaszLoss.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wxr521314/TumorSegmentation/HEAD/loss/LovaszLoss.py -------------------------------------------------------------------------------- /loss/TverskyLoss.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wxr521314/TumorSegmentation/HEAD/loss/TverskyLoss.py -------------------------------------------------------------------------------- /loss/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wxr521314/TumorSegmentation/HEAD/loss/__init__.py -------------------------------------------------------------------------------- /models/BasicModule.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wxr521314/TumorSegmentation/HEAD/models/BasicModule.py -------------------------------------------------------------------------------- /models/CascadeResUNet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wxr521314/TumorSegmentation/HEAD/models/CascadeResUNet.py -------------------------------------------------------------------------------- /models/DenseUNet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wxr521314/TumorSegmentation/HEAD/models/DenseUNet.py -------------------------------------------------------------------------------- /models/DilatedDenseUNet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wxr521314/TumorSegmentation/HEAD/models/DilatedDenseUNet.py -------------------------------------------------------------------------------- /models/NaiveUNet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wxr521314/TumorSegmentation/HEAD/models/NaiveUNet.py -------------------------------------------------------------------------------- /models/ResUNet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wxr521314/TumorSegmentation/HEAD/models/ResUNet.py -------------------------------------------------------------------------------- /models/UNet3D.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wxr521314/TumorSegmentation/HEAD/models/UNet3D.py -------------------------------------------------------------------------------- /models/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wxr521314/TumorSegmentation/HEAD/models/__init__.py -------------------------------------------------------------------------------- /preprocess_dataset.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wxr521314/TumorSegmentation/HEAD/preprocess_dataset.py -------------------------------------------------------------------------------- /preprocess_liver_seg.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wxr521314/TumorSegmentation/HEAD/preprocess_liver_seg.py -------------------------------------------------------------------------------- /preprocess_tumor_seg.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wxr521314/TumorSegmentation/HEAD/preprocess_tumor_seg.py -------------------------------------------------------------------------------- /train.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wxr521314/TumorSegmentation/HEAD/train.py -------------------------------------------------------------------------------- /train_cascade_net.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wxr521314/TumorSegmentation/HEAD/train_cascade_net.py -------------------------------------------------------------------------------- /utils/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wxr521314/TumorSegmentation/HEAD/utils/__init__.py -------------------------------------------------------------------------------- /utils/visualize.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wxr521314/TumorSegmentation/HEAD/utils/visualize.py -------------------------------------------------------------------------------- /val_cascade_net.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wxr521314/TumorSegmentation/HEAD/val_cascade_net.py -------------------------------------------------------------------------------- /val_liver_net.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wxr521314/TumorSegmentation/HEAD/val_liver_net.py -------------------------------------------------------------------------------- /val_tumor_net.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/wxr521314/TumorSegmentation/HEAD/val_tumor_net.py --------------------------------------------------------------------------------