├── .gitattributes ├── .gitignore ├── LICENSE ├── README.md ├── Ubuntu-M.ttf ├── data ├── train │ ├── atlas_seg.npz │ ├── atlas_vol.npz │ ├── train_seg.npz │ └── train_vol.npz └── validation │ ├── validation_seg.npz │ └── validation_vol.npz ├── main.py ├── scripts └── evaluate_segmenters.py ├── setup.sh ├── src ├── experiment_base.py ├── experiment_engine.py ├── metrics.py ├── mri_loader.py ├── networks.py ├── segmenter_model.py ├── transform_models.py └── utils.py ├── tests └── test_mri_loader.py └── trained_models ├── appearance_transform_model.h5 ├── spatial_transform_model.h5 └── spatial_transform_model_bck.h5 /.gitattributes: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/xamyzhao/brainstorm/HEAD/.gitattributes -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- 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