├── CNN_modeling ├── CNN_model_test_and_statistical_analysis │ ├── CNN-model_test.R │ └── CNN_CV_predictions.rar └── CNN_training_program │ ├── CNN_training.py │ ├── Sample_slices_GBM_PCNSL.txt │ └── heatmap_generation.py ├── LICENSE ├── README.md ├── preprocessing ├── S1_dcm2nii_batch_process.py ├── S2_ADC_calculate_batch.py ├── S3_nii_resample_batch_process.py ├── S4_BET_volume_generate.py ├── S5_BET_slices_generate.py ├── S6_generate_integrated_images.py └── preprocesser │ ├── DicomSeriesReadImageWrite.rar │ ├── EXE for preprocessing.txt │ ├── Resampler.rar │ └── bet2.rar ├── radiomics_modeling ├── 0-files_load.R ├── 1-radiomics_modelling-functions.R ├── 2-T1C_modelling.R ├── 3-T2F_modelling.R ├── 4-ADC_modelling.R ├── 5-IF_modelling.R ├── 6-DF_modelling.R ├── CV_5folds_split.csv ├── feature_extraction_program │ ├── Params.yaml │ └── pyra_feaex.py └── rad_feas.rar ├── statistical_analysis ├── ClincalInfo&DiagnosisByRadiologists.csv └── Stastistical analysis.R └── work_flow.jpg 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