├── .gitignore ├── Dockerfile ├── LICENSE ├── README.md ├── misc ├── ablogo.png ├── ablogo.white.png ├── crap_example.png ├── examples.png ├── logo.png ├── logo.white.png ├── mtdb.png ├── pictogo.png ├── pictogo.white.png └── tutorial.png ├── mycotools ├── __init__.py ├── acc2fa.py ├── acc2fq.py ├── acc2gbk.py ├── acc2gff.py ├── acc2locus.py ├── add2gff.py ├── annotationStats.py ├── assemblyStats.py ├── bioreform.py ├── coords2fa.py ├── crap.py ├── db2files.py ├── db2hgs.py ├── db2microsyntree.py ├── db2search.py ├── extract_mtdb.py ├── fa2clus.py ├── fa2hmmer2fa.py ├── fa2mass.py ├── fa2tree.py ├── fna2faa.py ├── gff2seq.py ├── gff2svg.py ├── jgiDwnld.py ├── lib │ ├── __init__.py │ ├── biotools.py │ ├── dbtools.py │ └── kontools.py ├── manage_mtdb.py ├── mtdb.py ├── ncbiAcc2fa.py ├── ncbiDwnld.py ├── ncbi_dwnld_fallback.py ├── ome2name.py ├── predb2mtdb.py ├── treetools.py ├── update_mtdb.py └── utils │ ├── __init__.py │ ├── curGFF3.py │ ├── extractHmmAcc.py │ ├── extractHmmsearch.py 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