├── README.md ├── download_table.txt ├── gsm_srr.txt ├── gsm_srr_sample_name.txt ├── sample_name.txt ├── samples01.txt ├── samples_bw.txt ├── samples_rep.txt └── scripts ├── 01.sra_download.sh ├── 02.sra_uncompress.sh ├── 03.r_chip_align.sh ├── 04.bam_markdup.sh ├── 05.bam_filter.sh ├── 06.sample_align_stat.sh ├── 07.genome_bin_read_coverage.sh ├── 08.bam_to_sep_bw.sh ├── 09.peak_comparison.sh └── 10.peak_signal_summary.sh /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/xuzhougeng/R-ChIP-data-analysis/HEAD/README.md -------------------------------------------------------------------------------- /download_table.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/xuzhougeng/R-ChIP-data-analysis/HEAD/download_table.txt -------------------------------------------------------------------------------- /gsm_srr.txt: 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