├── .gitattributes ├── .gitignore ├── .gitmodules ├── LICENSE ├── README.md ├── configs ├── config_setting.txt ├── smhsan_genia.json └── smhsan_genia_glove.json ├── data └── genia │ ├── bert │ └── test │ ├── char_vocab.json │ ├── embeddings.npy │ ├── empty.txt │ ├── genia.dev.iob2 │ ├── genia.dev.raw.pkl │ ├── genia.test.iob2 │ ├── genia.test.raw.pkl │ ├── genia.train.iob2 │ ├── genia.train.raw.pkl │ └── vocab.json ├── evaluate.py ├── smhsan ├── __init__.py ├── common │ ├── __init__.py │ └── util.py ├── dataset_readers │ ├── __init__.py │ ├── bd_json.py │ └── ec_json.py ├── models │ ├── __init__.py │ ├── attention_NER.py │ ├── layerBoundary.py │ └── type_extraction.py ├── modules │ ├── __init__.py │ ├── seq2seq_encoders │ │ ├── __init__.py │ │ └── stacked_gru.py │ └── text_field_embedders │ │ ├── __init__.py │ │ └── shortcut_connect_text_field_embedder.py ├── tasks │ ├── __init__.py │ └── task.py └── training │ ├── __init__.py │ ├── metrics │ ├── __init__.py │ ├── bd_metrics.py │ └── 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