├── Makefile ├── README ├── backward.py ├── compute_SDS.R ├── example.boundaries ├── example.gamma_shapes ├── example.observability ├── example.output ├── example.singletons ├── example.testsnp ├── gamma_shapes.Gravel_AFR.n100 ├── gamma_shapes.Gravel_EAS.n100 └── gamma_shapes.Tennessen_EUR.n100 /Makefile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/yairf/SDS/HEAD/Makefile -------------------------------------------------------------------------------- /README: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/yairf/SDS/HEAD/README -------------------------------------------------------------------------------- /backward.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/yairf/SDS/HEAD/backward.py -------------------------------------------------------------------------------- /compute_SDS.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/yairf/SDS/HEAD/compute_SDS.R -------------------------------------------------------------------------------- /example.boundaries: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/yairf/SDS/HEAD/example.boundaries -------------------------------------------------------------------------------- /example.gamma_shapes: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/yairf/SDS/HEAD/example.gamma_shapes -------------------------------------------------------------------------------- /example.observability: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/yairf/SDS/HEAD/example.observability -------------------------------------------------------------------------------- /example.output: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/yairf/SDS/HEAD/example.output -------------------------------------------------------------------------------- /example.singletons: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/yairf/SDS/HEAD/example.singletons -------------------------------------------------------------------------------- /example.testsnp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/yairf/SDS/HEAD/example.testsnp -------------------------------------------------------------------------------- /gamma_shapes.Gravel_AFR.n100: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/yairf/SDS/HEAD/gamma_shapes.Gravel_AFR.n100 -------------------------------------------------------------------------------- /gamma_shapes.Gravel_EAS.n100: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/yairf/SDS/HEAD/gamma_shapes.Gravel_EAS.n100 -------------------------------------------------------------------------------- /gamma_shapes.Tennessen_EUR.n100: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/yairf/SDS/HEAD/gamma_shapes.Tennessen_EUR.n100 --------------------------------------------------------------------------------