├── .gitignore ├── .gitmodules ├── LICENSE ├── README.md ├── dag_utils.py ├── data ├── sachs_ground_truth.npy └── sachs_observational.csv ├── dream_sweep.yml ├── environment.yml ├── envs ├── __init__.py ├── basic.py ├── bif_environment.py ├── causal_environment.py ├── distributions.py ├── dream4.py ├── dream4 │ ├── configurations │ │ ├── InSilicoSize10-Ecoli1.xml │ │ ├── InSilicoSize10-Ecoli2.xml │ │ ├── InSilicoSize10-Yeast1.xml │ │ ├── InSilicoSize10-Yeast2.xml │ │ ├── InSilicoSize10-Yeast3.xml │ │ ├── InSilicoSize100-Ecoli1.xml │ │ ├── InSilicoSize100-Ecoli2.xml │ │ ├── InSilicoSize100-Yeast1.xml │ │ ├── InSilicoSize100-Yeast2.xml │ │ ├── InSilicoSize100-Yeast3.xml │ │ ├── InSilicoSize50-Ecoli1.xml │ │ ├── InSilicoSize50-Ecoli2.xml │ │ ├── InSilicoSize50-Yeast1.xml │ │ ├── InSilicoSize50-Yeast2.xml │ │ ├── InSilicoSize50-Yeast3.xml │ │ ├── insilico_size100_1.xml │ │ ├── insilico_size100_2.xml │ │ ├── insilico_size100_3.xml │ │ ├── insilico_size100_4.xml │ │ ├── insilico_size100_5.xml │ │ ├── insilico_size10_1.xml │ │ ├── insilico_size10_2.xml │ │ ├── insilico_size10_3.xml │ │ ├── insilico_size10_4.xml │ │ └── insilico_size10_5.xml │ └── settings.txt ├── erdos_renyi.py ├── samplers.py ├── scale_free.py └── utils.py ├── experimental_design.py ├── fig └── BOEDCD.png ├── models ├── __init__.py ├── dag_bootstrap.py ├── dag_bootstrap_lib │ ├── __init__.py │ ├── config.py │ ├── gies_helper.r │ ├── install.r │ ├── run_gies.r │ └── utils.py ├── dibs_model.py └── posterior_model.py ├── plot_results.py ├── replay_buffer.py ├── requirements.txt ├── run_experiments.sh ├── strategies ├── __init__.py ├── abcd.py ├── acquisition_strategy.py ├── cbed.py ├── f_score.py ├── random.py ├── replay.py └── value_acquisition_strategy.py └── utils ├── __init__.py ├── logger.py ├── metrics.py └── utils.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/yannadani/cbed/HEAD/.gitignore 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