├── README.md ├── augmentation ├── __init__.py ├── __pycache__ │ ├── __init__.cpython-36.pyc │ ├── __init__.cpython-37.pyc │ ├── __init__.cpython-38.pyc │ ├── augmentor.cpython-36.pyc │ ├── augmentor.cpython-37.pyc │ ├── augmentor.cpython-38.pyc │ ├── composition.cpython-36.pyc │ ├── composition.cpython-37.pyc │ ├── composition.cpython-38.pyc │ ├── cutblur.cpython-36.pyc │ ├── cutblur.cpython-37.pyc │ ├── cutblur.cpython-38.pyc │ ├── cutnoise.cpython-36.pyc │ ├── cutnoise.cpython-37.pyc │ ├── cutnoise.cpython-38.pyc │ ├── flip.cpython-36.pyc │ ├── flip.cpython-37.pyc │ ├── flip.cpython-38.pyc │ ├── grayscale.cpython-36.pyc │ ├── grayscale.cpython-37.pyc │ ├── grayscale.cpython-38.pyc │ ├── misalign.cpython-36.pyc │ ├── misalign.cpython-37.pyc │ ├── misalign.cpython-38.pyc │ ├── missing_parts.cpython-36.pyc │ ├── missing_parts.cpython-37.pyc │ ├── missing_parts.cpython-38.pyc │ ├── missing_section.cpython-36.pyc │ ├── missing_section.cpython-37.pyc │ ├── missing_section.cpython-38.pyc │ ├── mixup.cpython-36.pyc │ ├── mixup.cpython-37.pyc │ ├── mixup.cpython-38.pyc │ ├── motion_blur.cpython-36.pyc │ ├── motion_blur.cpython-37.pyc │ ├── motion_blur.cpython-38.pyc │ ├── rescale.cpython-36.pyc │ ├── rescale.cpython-37.pyc │ ├── rescale.cpython-38.pyc │ ├── rotation.cpython-36.pyc │ ├── rotation.cpython-37.pyc │ ├── rotation.cpython-38.pyc │ ├── test_augmentor.cpython-36.pyc │ ├── test_augmentor.cpython-37.pyc │ ├── test_augmentor.cpython-38.pyc │ ├── warp.cpython-36.pyc │ ├── warp.cpython-37.pyc │ └── warp.cpython-38.pyc ├── augmentor.py ├── composition.py ├── cutblur.py ├── cutnoise.py ├── flip.py ├── grayscale.py ├── misalign.py ├── missing_parts.py ├── missing_section.py ├── mixup.py ├── motion_blur.py ├── rescale.py ├── rotation.py ├── test_augmentor.py └── warp.py ├── config ├── seg_3d_ac4_data80.yaml ├── seg_3d_cremiA_data100.yaml ├── seg_3d_cremiB_data100.yaml ├── seg_3d_cremiC_data100.yaml ├── seg_3d_wafer26_data100.yaml └── seg_3d_wafer4_data100.yaml ├── data ├── __pycache__ │ ├── data_affinity.cpython-37.pyc │ ├── data_affinity.cpython-38.pyc │ ├── data_misc.cpython-37.pyc │ ├── data_misc.cpython-38.pyc │ ├── data_segmentation.cpython-37.pyc │ ├── data_segmentation.cpython-38.pyc │ ├── data_transform.cpython-37.pyc │ ├── data_transform.cpython-38.pyc │ └── total_data_provider.cpython-37.pyc ├── data_affinity.py ├── data_misc.py ├── data_segmentation.py ├── data_transform.py └── total_data_provider.py ├── dataloader ├── __pycache__ │ ├── data_provider_labeled.cpython-37.pyc │ ├── data_provider_pretraining.cpython-37.pyc │ ├── data_provider_pretraining.cpython-38.pyc │ ├── data_provider_pretraining_2d.cpython-37.pyc │ ├── data_provider_pretraining_autoregress.cpython-38.pyc │ ├── data_provider_unlabel.cpython-37.pyc │ ├── provider_valid.cpython-37.pyc │ └── provider_valid_pretraining.cpython-37.pyc ├── data_provider_labeled.py ├── data_provider_pretraining.py ├── data_provider_pretraining_2d.py ├── data_provider_pretraining_autoregress.py ├── dataloader.sh ├── provider_valid.py ├── provider_valid_pretraining.py ├── reader.ipynb ├── test.ipynb ├── test.py └── unzip_tar.py ├── framework1.png ├── framework2.png ├── loss ├── __init__.py ├── __pycache__ │ ├── __init__.cpython-37.pyc │ ├── __init__.cpython-38.pyc │ ├── loss.cpython-37.pyc │ ├── loss.cpython-38.pyc │ └── loss_embedding_mse.cpython-38.pyc ├── loss.py ├── loss_embedding_mse.py └── loss_unlabel.py ├── mamba_local ├── AUTHORS ├── LICENSE ├── README.md ├── assets │ └── selection.png ├── benchmarks │ └── benchmark_generation_mamba_simple.py ├── build │ └── lib.linux-x86_64-3.8 │ │ └── mamba_ssm │ │ ├── __init__.py │ │ ├── models │ │ ├── __init__.py │ │ └── mixer_seq_simple.py │ │ ├── modules │ │ ├── __init__.py │ │ └── mamba_simple.py │ │ ├── ops │ │ ├── __init__.py │ │ ├── selective_scan_interface.py │ │ └── triton │ │ │ ├── __init__.py │ │ │ ├── layernorm.py │ │ │ └── selective_state_update.py │ │ └── utils │ │ ├── __init__.py │ │ ├── generation.py │ │ └── hf.py ├── csrc │ └── selective_scan │ │ ├── reverse_scan.cuh │ │ ├── selective_scan.cpp │ │ ├── selective_scan.h │ │ ├── selective_scan_bwd_bf16_complex.cu │ │ ├── selective_scan_bwd_bf16_real.cu │ │ ├── selective_scan_bwd_fp16_complex.cu │ │ ├── selective_scan_bwd_fp16_real.cu │ │ ├── selective_scan_bwd_fp32_complex.cu │ │ ├── selective_scan_bwd_fp32_real.cu │ │ ├── selective_scan_bwd_kernel.cuh │ │ ├── selective_scan_common.h │ │ ├── selective_scan_fwd_bf16.cu │ │ ├── selective_scan_fwd_fp16.cu │ │ ├── selective_scan_fwd_fp32.cu │ │ ├── selective_scan_fwd_kernel.cuh │ │ ├── static_switch.h │ │ └── uninitialized_copy.cuh ├── evals │ └── lm_harness_eval.py ├── mamba_ssm.egg-info │ ├── PKG-INFO │ ├── SOURCES.txt │ ├── dependency_links.txt │ ├── requires.txt │ └── top_level.txt ├── mamba_ssm_local │ ├── __init__.py │ ├── __pycache__ │ │ ├── __init__.cpython-37.pyc │ │ └── __init__.cpython-38.pyc │ ├── causal_conv1d_local │ │ ├── AUTHORS │ │ ├── LICENSE │ │ ├── README.md │ │ ├── causal_conv1d │ │ │ ├── __init__.py │ │ │ ├── __pycache__ │ │ │ │ ├── __init__.cpython-37.pyc │ │ │ │ └── __init__.cpython-38.pyc │ │ │ └── causal_conv1d_interface.py │ │ ├── csrc │ │ │ ├── causal_conv1d.cpp │ │ │ ├── causal_conv1d.h │ │ │ ├── causal_conv1d_bwd.cu │ │ │ ├── causal_conv1d_common.h │ │ │ ├── causal_conv1d_fwd.cu │ │ │ ├── causal_conv1d_update.cu │ │ │ └── static_switch.h │ │ ├── setup.py │ │ └── tests │ │ │ └── test_causal_conv1d.py │ ├── models │ │ ├── __init__.py │ │ ├── __pycache__ │ │ │ ├── __init__.cpython-38.pyc │ │ │ └── mixer_seq_simple.cpython-38.pyc │ │ └── mixer_seq_simple.py │ ├── modules │ │ ├── __init__.py │ │ ├── __pycache__ │ │ │ ├── __init__.cpython-38.pyc │ │ │ └── mamba_simple.cpython-38.pyc │ │ └── mamba_simple.py │ ├── ops │ │ ├── __init__.py │ │ ├── __pycache__ │ │ │ ├── __init__.cpython-37.pyc │ │ │ ├── __init__.cpython-38.pyc │ │ │ ├── selective_scan_interface.cpython-37.pyc │ │ │ └── selective_scan_interface.cpython-38.pyc │ │ ├── selective_scan_interface.py │ │ └── triton │ │ │ ├── __init__.py │ │ │ ├── __pycache__ │ │ │ ├── __init__.cpython-38.pyc │ │ │ ├── layernorm.cpython-38.pyc │ │ │ └── selective_state_update.cpython-38.pyc │ │ │ ├── layernorm.py │ │ │ └── selective_state_update.py │ └── utils │ │ ├── __init__.py │ │ ├── generation.py │ │ └── hf.py ├── setup.py ├── test_mamba_module.py └── tests │ └── ops │ ├── test_selective_scan.py │ └── triton │ └── test_selective_state_update.py ├── model ├── __init__.py ├── __pycache__ │ ├── __init__.cpython-37.pyc │ ├── __init__.cpython-38.pyc │ ├── basic.cpython-37.pyc │ ├── basic.cpython-38.pyc │ ├── model_1.cpython-37.pyc │ ├── model_para.cpython-37.pyc │ ├── model_para.cpython-38.pyc │ ├── residual.cpython-37.pyc │ └── residual.cpython-38.pyc ├── basic.py ├── model_para.py ├── monitor.py ├── residual.py └── squeeze_excite.py ├── results1.png ├── results2.png ├── src ├── SwinUMamba.py ├── data_check.py ├── data_provider_labeled.py ├── data_visual.py ├── engine_finetune.py ├── engine_finetune2.py ├── engine_pretrain.py ├── engine_pretrain_autoregress.py ├── eval.py ├── eval_signle.py ├── eval_single_25.py ├── inference.py ├── inference_monai.py ├── launch.json ├── main_finetune.py ├── main_finetune2.py ├── main_finetune_mamba.py ├── main_finetune_small.py ├── main_pretrain.py ├── main_pretrain_autoregress.py ├── model_superhuman2.py ├── model_superhuman_pea.py ├── model_unetr.py ├── model_unetr2.py ├── model_unetr2_variant.py ├── model_vit_3d.py ├── model_vit_3d_varient.py ├── models_mamba.py ├── provider_valid.py ├── run_MEC_seg.sh ├── run_mamba_mae.sh ├── run_mamba_mae_AR.sh ├── run_mamba_seg.sh ├── run_parallel.sh ├── run_parallel_gaussian.sh ├── run_parallel_superhuman.sh ├── segmamba.py ├── segmamba_ar.py ├── segmamba_deep.py ├── segmamba_small.py ├── segmamba_variant.py ├── test_aff_img.png ├── test_raw_img.png ├── test_segmamba.py └── unet3d_mala.py ├── util_mamba ├── MultiScaleAttention.py ├── __pycache__ │ ├── MultiScaleAttention.cpython-37.pyc │ ├── datasets.cpython-37.pyc │ ├── datasets.cpython-38.pyc │ ├── lr_decay.cpython-37.pyc │ ├── lr_decay.cpython-38.pyc │ ├── lr_sched.cpython-37.pyc │ ├── lr_sched.cpython-38.pyc │ ├── misc.cpython-37.pyc │ ├── misc.cpython-38.pyc │ ├── pos_embed.cpython-37.pyc │ └── pos_embed.cpython-38.pyc ├── crop.py ├── datasets.py ├── lars.py ├── lr_decay.py ├── lr_sched.py ├── misc.py └── pos_embed.py ├── utils ├── aff_util.py ├── affine.py ├── affinity_official.py ├── affinity_ours.py ├── augmentation.py ├── augmentation_affine.py ├── consistency_aug.py ├── coordinate.py ├── encoder_dict.py ├── fragment.py ├── gen_pseudo.py ├── lmc.py ├── malis_loss.py ├── mc_baselines.py ├── optim_weight_ema.py ├── seeds_func.py ├── seg_util.py ├── shift_channels.py ├── show.py ├── torch_utils.py └── utils.py └── visual_results.png /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/README.md -------------------------------------------------------------------------------- /augmentation/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/augmentation/__init__.py -------------------------------------------------------------------------------- /augmentation/__pycache__/__init__.cpython-36.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/augmentation/__pycache__/__init__.cpython-36.pyc -------------------------------------------------------------------------------- /augmentation/__pycache__/__init__.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/augmentation/__pycache__/__init__.cpython-37.pyc -------------------------------------------------------------------------------- /augmentation/__pycache__/__init__.cpython-38.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/augmentation/__pycache__/__init__.cpython-38.pyc -------------------------------------------------------------------------------- /augmentation/__pycache__/augmentor.cpython-36.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/augmentation/__pycache__/augmentor.cpython-36.pyc -------------------------------------------------------------------------------- /augmentation/__pycache__/augmentor.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/augmentation/__pycache__/augmentor.cpython-37.pyc -------------------------------------------------------------------------------- /augmentation/__pycache__/augmentor.cpython-38.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/augmentation/__pycache__/augmentor.cpython-38.pyc -------------------------------------------------------------------------------- /augmentation/__pycache__/composition.cpython-36.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/augmentation/__pycache__/composition.cpython-36.pyc -------------------------------------------------------------------------------- /augmentation/__pycache__/composition.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/augmentation/__pycache__/composition.cpython-37.pyc -------------------------------------------------------------------------------- /augmentation/__pycache__/composition.cpython-38.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/augmentation/__pycache__/composition.cpython-38.pyc -------------------------------------------------------------------------------- /augmentation/__pycache__/cutblur.cpython-36.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/augmentation/__pycache__/cutblur.cpython-36.pyc -------------------------------------------------------------------------------- /augmentation/__pycache__/cutblur.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/augmentation/__pycache__/cutblur.cpython-37.pyc -------------------------------------------------------------------------------- /augmentation/__pycache__/cutblur.cpython-38.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/augmentation/__pycache__/cutblur.cpython-38.pyc -------------------------------------------------------------------------------- /augmentation/__pycache__/cutnoise.cpython-36.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/augmentation/__pycache__/cutnoise.cpython-36.pyc -------------------------------------------------------------------------------- /augmentation/__pycache__/cutnoise.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/augmentation/__pycache__/cutnoise.cpython-37.pyc -------------------------------------------------------------------------------- /augmentation/__pycache__/cutnoise.cpython-38.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/augmentation/__pycache__/cutnoise.cpython-38.pyc -------------------------------------------------------------------------------- /augmentation/__pycache__/flip.cpython-36.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/augmentation/__pycache__/flip.cpython-36.pyc -------------------------------------------------------------------------------- /augmentation/__pycache__/flip.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/augmentation/__pycache__/flip.cpython-37.pyc -------------------------------------------------------------------------------- /augmentation/__pycache__/flip.cpython-38.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/augmentation/__pycache__/flip.cpython-38.pyc -------------------------------------------------------------------------------- /augmentation/__pycache__/grayscale.cpython-36.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/augmentation/__pycache__/grayscale.cpython-36.pyc -------------------------------------------------------------------------------- /augmentation/__pycache__/grayscale.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/augmentation/__pycache__/grayscale.cpython-37.pyc -------------------------------------------------------------------------------- /augmentation/__pycache__/grayscale.cpython-38.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/augmentation/__pycache__/grayscale.cpython-38.pyc -------------------------------------------------------------------------------- /augmentation/__pycache__/misalign.cpython-36.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/augmentation/__pycache__/misalign.cpython-36.pyc -------------------------------------------------------------------------------- /augmentation/__pycache__/misalign.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/augmentation/__pycache__/misalign.cpython-37.pyc -------------------------------------------------------------------------------- /augmentation/__pycache__/misalign.cpython-38.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/augmentation/__pycache__/misalign.cpython-38.pyc -------------------------------------------------------------------------------- /augmentation/__pycache__/missing_parts.cpython-36.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/augmentation/__pycache__/missing_parts.cpython-36.pyc -------------------------------------------------------------------------------- /augmentation/__pycache__/missing_parts.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/augmentation/__pycache__/missing_parts.cpython-37.pyc -------------------------------------------------------------------------------- /augmentation/__pycache__/missing_parts.cpython-38.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/augmentation/__pycache__/missing_parts.cpython-38.pyc -------------------------------------------------------------------------------- /augmentation/__pycache__/missing_section.cpython-36.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/augmentation/__pycache__/missing_section.cpython-36.pyc -------------------------------------------------------------------------------- /augmentation/__pycache__/missing_section.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/augmentation/__pycache__/missing_section.cpython-37.pyc -------------------------------------------------------------------------------- /augmentation/__pycache__/missing_section.cpython-38.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/augmentation/__pycache__/missing_section.cpython-38.pyc -------------------------------------------------------------------------------- /augmentation/__pycache__/mixup.cpython-36.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/augmentation/__pycache__/mixup.cpython-36.pyc -------------------------------------------------------------------------------- /augmentation/__pycache__/mixup.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/augmentation/__pycache__/mixup.cpython-37.pyc -------------------------------------------------------------------------------- /augmentation/__pycache__/mixup.cpython-38.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/augmentation/__pycache__/mixup.cpython-38.pyc -------------------------------------------------------------------------------- /augmentation/__pycache__/motion_blur.cpython-36.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/augmentation/__pycache__/motion_blur.cpython-36.pyc -------------------------------------------------------------------------------- /augmentation/__pycache__/motion_blur.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/augmentation/__pycache__/motion_blur.cpython-37.pyc -------------------------------------------------------------------------------- /augmentation/__pycache__/motion_blur.cpython-38.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/augmentation/__pycache__/motion_blur.cpython-38.pyc -------------------------------------------------------------------------------- /augmentation/__pycache__/rescale.cpython-36.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/augmentation/__pycache__/rescale.cpython-36.pyc -------------------------------------------------------------------------------- /augmentation/__pycache__/rescale.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/augmentation/__pycache__/rescale.cpython-37.pyc -------------------------------------------------------------------------------- /augmentation/__pycache__/rescale.cpython-38.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/augmentation/__pycache__/rescale.cpython-38.pyc -------------------------------------------------------------------------------- /augmentation/__pycache__/rotation.cpython-36.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/augmentation/__pycache__/rotation.cpython-36.pyc -------------------------------------------------------------------------------- /augmentation/__pycache__/rotation.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/augmentation/__pycache__/rotation.cpython-37.pyc -------------------------------------------------------------------------------- /augmentation/__pycache__/rotation.cpython-38.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/augmentation/__pycache__/rotation.cpython-38.pyc -------------------------------------------------------------------------------- /augmentation/__pycache__/test_augmentor.cpython-36.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/augmentation/__pycache__/test_augmentor.cpython-36.pyc -------------------------------------------------------------------------------- /augmentation/__pycache__/test_augmentor.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/augmentation/__pycache__/test_augmentor.cpython-37.pyc -------------------------------------------------------------------------------- /augmentation/__pycache__/test_augmentor.cpython-38.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/augmentation/__pycache__/test_augmentor.cpython-38.pyc -------------------------------------------------------------------------------- /augmentation/__pycache__/warp.cpython-36.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/augmentation/__pycache__/warp.cpython-36.pyc -------------------------------------------------------------------------------- /augmentation/__pycache__/warp.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/augmentation/__pycache__/warp.cpython-37.pyc -------------------------------------------------------------------------------- /augmentation/__pycache__/warp.cpython-38.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/augmentation/__pycache__/warp.cpython-38.pyc -------------------------------------------------------------------------------- /augmentation/augmentor.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/augmentation/augmentor.py -------------------------------------------------------------------------------- /augmentation/composition.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/augmentation/composition.py -------------------------------------------------------------------------------- /augmentation/cutblur.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/augmentation/cutblur.py -------------------------------------------------------------------------------- /augmentation/cutnoise.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/augmentation/cutnoise.py -------------------------------------------------------------------------------- /augmentation/flip.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/augmentation/flip.py -------------------------------------------------------------------------------- /augmentation/grayscale.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/augmentation/grayscale.py -------------------------------------------------------------------------------- /augmentation/misalign.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/augmentation/misalign.py -------------------------------------------------------------------------------- /augmentation/missing_parts.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/augmentation/missing_parts.py -------------------------------------------------------------------------------- /augmentation/missing_section.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/augmentation/missing_section.py -------------------------------------------------------------------------------- /augmentation/mixup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/augmentation/mixup.py -------------------------------------------------------------------------------- /augmentation/motion_blur.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/augmentation/motion_blur.py -------------------------------------------------------------------------------- /augmentation/rescale.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/augmentation/rescale.py -------------------------------------------------------------------------------- /augmentation/rotation.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/augmentation/rotation.py -------------------------------------------------------------------------------- /augmentation/test_augmentor.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/augmentation/test_augmentor.py -------------------------------------------------------------------------------- /augmentation/warp.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/augmentation/warp.py -------------------------------------------------------------------------------- /config/seg_3d_ac4_data80.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/config/seg_3d_ac4_data80.yaml -------------------------------------------------------------------------------- /config/seg_3d_cremiA_data100.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/config/seg_3d_cremiA_data100.yaml -------------------------------------------------------------------------------- /config/seg_3d_cremiB_data100.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/config/seg_3d_cremiB_data100.yaml -------------------------------------------------------------------------------- /config/seg_3d_cremiC_data100.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/config/seg_3d_cremiC_data100.yaml -------------------------------------------------------------------------------- /config/seg_3d_wafer26_data100.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/config/seg_3d_wafer26_data100.yaml -------------------------------------------------------------------------------- /config/seg_3d_wafer4_data100.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/config/seg_3d_wafer4_data100.yaml -------------------------------------------------------------------------------- /data/__pycache__/data_affinity.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/data/__pycache__/data_affinity.cpython-37.pyc -------------------------------------------------------------------------------- /data/__pycache__/data_affinity.cpython-38.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/data/__pycache__/data_affinity.cpython-38.pyc -------------------------------------------------------------------------------- /data/__pycache__/data_misc.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/data/__pycache__/data_misc.cpython-37.pyc -------------------------------------------------------------------------------- /data/__pycache__/data_misc.cpython-38.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/data/__pycache__/data_misc.cpython-38.pyc -------------------------------------------------------------------------------- /data/__pycache__/data_segmentation.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/data/__pycache__/data_segmentation.cpython-37.pyc -------------------------------------------------------------------------------- /data/__pycache__/data_segmentation.cpython-38.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/data/__pycache__/data_segmentation.cpython-38.pyc -------------------------------------------------------------------------------- /data/__pycache__/data_transform.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/data/__pycache__/data_transform.cpython-37.pyc -------------------------------------------------------------------------------- /data/__pycache__/data_transform.cpython-38.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/data/__pycache__/data_transform.cpython-38.pyc -------------------------------------------------------------------------------- /data/__pycache__/total_data_provider.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/data/__pycache__/total_data_provider.cpython-37.pyc -------------------------------------------------------------------------------- /data/data_affinity.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/data/data_affinity.py -------------------------------------------------------------------------------- /data/data_misc.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/data/data_misc.py -------------------------------------------------------------------------------- /data/data_segmentation.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/data/data_segmentation.py -------------------------------------------------------------------------------- /data/data_transform.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/data/data_transform.py -------------------------------------------------------------------------------- /data/total_data_provider.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/data/total_data_provider.py -------------------------------------------------------------------------------- /dataloader/__pycache__/data_provider_labeled.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/dataloader/__pycache__/data_provider_labeled.cpython-37.pyc -------------------------------------------------------------------------------- /dataloader/__pycache__/data_provider_pretraining.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/dataloader/__pycache__/data_provider_pretraining.cpython-37.pyc -------------------------------------------------------------------------------- /dataloader/__pycache__/data_provider_pretraining.cpython-38.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/dataloader/__pycache__/data_provider_pretraining.cpython-38.pyc -------------------------------------------------------------------------------- /dataloader/__pycache__/data_provider_pretraining_2d.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/dataloader/__pycache__/data_provider_pretraining_2d.cpython-37.pyc -------------------------------------------------------------------------------- /dataloader/__pycache__/data_provider_pretraining_autoregress.cpython-38.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/dataloader/__pycache__/data_provider_pretraining_autoregress.cpython-38.pyc -------------------------------------------------------------------------------- /dataloader/__pycache__/data_provider_unlabel.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/dataloader/__pycache__/data_provider_unlabel.cpython-37.pyc -------------------------------------------------------------------------------- /dataloader/__pycache__/provider_valid.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/dataloader/__pycache__/provider_valid.cpython-37.pyc -------------------------------------------------------------------------------- /dataloader/__pycache__/provider_valid_pretraining.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/dataloader/__pycache__/provider_valid_pretraining.cpython-37.pyc -------------------------------------------------------------------------------- /dataloader/data_provider_labeled.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/dataloader/data_provider_labeled.py -------------------------------------------------------------------------------- /dataloader/data_provider_pretraining.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/dataloader/data_provider_pretraining.py -------------------------------------------------------------------------------- /dataloader/data_provider_pretraining_2d.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/dataloader/data_provider_pretraining_2d.py -------------------------------------------------------------------------------- /dataloader/data_provider_pretraining_autoregress.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/dataloader/data_provider_pretraining_autoregress.py -------------------------------------------------------------------------------- /dataloader/dataloader.sh: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /dataloader/provider_valid.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/dataloader/provider_valid.py -------------------------------------------------------------------------------- /dataloader/provider_valid_pretraining.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/dataloader/provider_valid_pretraining.py -------------------------------------------------------------------------------- /dataloader/reader.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/dataloader/reader.ipynb -------------------------------------------------------------------------------- /dataloader/test.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/dataloader/test.ipynb -------------------------------------------------------------------------------- /dataloader/test.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/dataloader/test.py -------------------------------------------------------------------------------- /dataloader/unzip_tar.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/dataloader/unzip_tar.py -------------------------------------------------------------------------------- /framework1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/framework1.png -------------------------------------------------------------------------------- /framework2.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/framework2.png -------------------------------------------------------------------------------- /loss/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /loss/__pycache__/__init__.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/loss/__pycache__/__init__.cpython-37.pyc -------------------------------------------------------------------------------- /loss/__pycache__/__init__.cpython-38.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/loss/__pycache__/__init__.cpython-38.pyc -------------------------------------------------------------------------------- /loss/__pycache__/loss.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/loss/__pycache__/loss.cpython-37.pyc -------------------------------------------------------------------------------- /loss/__pycache__/loss.cpython-38.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/loss/__pycache__/loss.cpython-38.pyc -------------------------------------------------------------------------------- /loss/__pycache__/loss_embedding_mse.cpython-38.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/loss/__pycache__/loss_embedding_mse.cpython-38.pyc -------------------------------------------------------------------------------- /loss/loss.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/loss/loss.py -------------------------------------------------------------------------------- /loss/loss_embedding_mse.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/loss/loss_embedding_mse.py -------------------------------------------------------------------------------- /loss/loss_unlabel.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/loss/loss_unlabel.py -------------------------------------------------------------------------------- /mamba_local/AUTHORS: -------------------------------------------------------------------------------- 1 | Tri Dao, tri@tridao.me 2 | Albert Gu, agu@andrew.cmu.edu 3 | -------------------------------------------------------------------------------- /mamba_local/LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/mamba_local/LICENSE -------------------------------------------------------------------------------- /mamba_local/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/mamba_local/README.md -------------------------------------------------------------------------------- /mamba_local/assets/selection.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/mamba_local/assets/selection.png -------------------------------------------------------------------------------- /mamba_local/benchmarks/benchmark_generation_mamba_simple.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/mamba_local/benchmarks/benchmark_generation_mamba_simple.py -------------------------------------------------------------------------------- /mamba_local/build/lib.linux-x86_64-3.8/mamba_ssm/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/mamba_local/build/lib.linux-x86_64-3.8/mamba_ssm/__init__.py -------------------------------------------------------------------------------- /mamba_local/build/lib.linux-x86_64-3.8/mamba_ssm/models/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /mamba_local/build/lib.linux-x86_64-3.8/mamba_ssm/models/mixer_seq_simple.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/mamba_local/build/lib.linux-x86_64-3.8/mamba_ssm/models/mixer_seq_simple.py -------------------------------------------------------------------------------- /mamba_local/build/lib.linux-x86_64-3.8/mamba_ssm/modules/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /mamba_local/build/lib.linux-x86_64-3.8/mamba_ssm/modules/mamba_simple.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/mamba_local/build/lib.linux-x86_64-3.8/mamba_ssm/modules/mamba_simple.py -------------------------------------------------------------------------------- /mamba_local/build/lib.linux-x86_64-3.8/mamba_ssm/ops/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /mamba_local/build/lib.linux-x86_64-3.8/mamba_ssm/ops/selective_scan_interface.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/mamba_local/build/lib.linux-x86_64-3.8/mamba_ssm/ops/selective_scan_interface.py -------------------------------------------------------------------------------- /mamba_local/build/lib.linux-x86_64-3.8/mamba_ssm/ops/triton/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /mamba_local/build/lib.linux-x86_64-3.8/mamba_ssm/ops/triton/layernorm.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/mamba_local/build/lib.linux-x86_64-3.8/mamba_ssm/ops/triton/layernorm.py -------------------------------------------------------------------------------- /mamba_local/build/lib.linux-x86_64-3.8/mamba_ssm/ops/triton/selective_state_update.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/mamba_local/build/lib.linux-x86_64-3.8/mamba_ssm/ops/triton/selective_state_update.py -------------------------------------------------------------------------------- /mamba_local/build/lib.linux-x86_64-3.8/mamba_ssm/utils/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /mamba_local/build/lib.linux-x86_64-3.8/mamba_ssm/utils/generation.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/mamba_local/build/lib.linux-x86_64-3.8/mamba_ssm/utils/generation.py -------------------------------------------------------------------------------- /mamba_local/build/lib.linux-x86_64-3.8/mamba_ssm/utils/hf.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/mamba_local/build/lib.linux-x86_64-3.8/mamba_ssm/utils/hf.py -------------------------------------------------------------------------------- /mamba_local/csrc/selective_scan/reverse_scan.cuh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/mamba_local/csrc/selective_scan/reverse_scan.cuh -------------------------------------------------------------------------------- /mamba_local/csrc/selective_scan/selective_scan.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/mamba_local/csrc/selective_scan/selective_scan.cpp -------------------------------------------------------------------------------- /mamba_local/csrc/selective_scan/selective_scan.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/mamba_local/csrc/selective_scan/selective_scan.h -------------------------------------------------------------------------------- /mamba_local/csrc/selective_scan/selective_scan_bwd_bf16_complex.cu: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/mamba_local/csrc/selective_scan/selective_scan_bwd_bf16_complex.cu -------------------------------------------------------------------------------- /mamba_local/csrc/selective_scan/selective_scan_bwd_bf16_real.cu: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/mamba_local/csrc/selective_scan/selective_scan_bwd_bf16_real.cu -------------------------------------------------------------------------------- /mamba_local/csrc/selective_scan/selective_scan_bwd_fp16_complex.cu: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/mamba_local/csrc/selective_scan/selective_scan_bwd_fp16_complex.cu -------------------------------------------------------------------------------- /mamba_local/csrc/selective_scan/selective_scan_bwd_fp16_real.cu: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/mamba_local/csrc/selective_scan/selective_scan_bwd_fp16_real.cu -------------------------------------------------------------------------------- /mamba_local/csrc/selective_scan/selective_scan_bwd_fp32_complex.cu: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/mamba_local/csrc/selective_scan/selective_scan_bwd_fp32_complex.cu -------------------------------------------------------------------------------- /mamba_local/csrc/selective_scan/selective_scan_bwd_fp32_real.cu: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/mamba_local/csrc/selective_scan/selective_scan_bwd_fp32_real.cu -------------------------------------------------------------------------------- /mamba_local/csrc/selective_scan/selective_scan_bwd_kernel.cuh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/mamba_local/csrc/selective_scan/selective_scan_bwd_kernel.cuh -------------------------------------------------------------------------------- /mamba_local/csrc/selective_scan/selective_scan_common.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/mamba_local/csrc/selective_scan/selective_scan_common.h -------------------------------------------------------------------------------- /mamba_local/csrc/selective_scan/selective_scan_fwd_bf16.cu: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/mamba_local/csrc/selective_scan/selective_scan_fwd_bf16.cu -------------------------------------------------------------------------------- /mamba_local/csrc/selective_scan/selective_scan_fwd_fp16.cu: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/mamba_local/csrc/selective_scan/selective_scan_fwd_fp16.cu -------------------------------------------------------------------------------- /mamba_local/csrc/selective_scan/selective_scan_fwd_fp32.cu: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/mamba_local/csrc/selective_scan/selective_scan_fwd_fp32.cu -------------------------------------------------------------------------------- /mamba_local/csrc/selective_scan/selective_scan_fwd_kernel.cuh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/mamba_local/csrc/selective_scan/selective_scan_fwd_kernel.cuh -------------------------------------------------------------------------------- /mamba_local/csrc/selective_scan/static_switch.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/mamba_local/csrc/selective_scan/static_switch.h -------------------------------------------------------------------------------- /mamba_local/csrc/selective_scan/uninitialized_copy.cuh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/mamba_local/csrc/selective_scan/uninitialized_copy.cuh -------------------------------------------------------------------------------- /mamba_local/evals/lm_harness_eval.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/mamba_local/evals/lm_harness_eval.py -------------------------------------------------------------------------------- /mamba_local/mamba_ssm.egg-info/PKG-INFO: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/mamba_local/mamba_ssm.egg-info/PKG-INFO -------------------------------------------------------------------------------- /mamba_local/mamba_ssm.egg-info/SOURCES.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/mamba_local/mamba_ssm.egg-info/SOURCES.txt -------------------------------------------------------------------------------- /mamba_local/mamba_ssm.egg-info/dependency_links.txt: -------------------------------------------------------------------------------- 1 | 2 | -------------------------------------------------------------------------------- /mamba_local/mamba_ssm.egg-info/requires.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/mamba_local/mamba_ssm.egg-info/requires.txt -------------------------------------------------------------------------------- /mamba_local/mamba_ssm.egg-info/top_level.txt: -------------------------------------------------------------------------------- 1 | mamba_ssm 2 | selective_scan_cuda 3 | -------------------------------------------------------------------------------- /mamba_local/mamba_ssm_local/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/mamba_local/mamba_ssm_local/__init__.py -------------------------------------------------------------------------------- /mamba_local/mamba_ssm_local/__pycache__/__init__.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/mamba_local/mamba_ssm_local/__pycache__/__init__.cpython-37.pyc -------------------------------------------------------------------------------- /mamba_local/mamba_ssm_local/__pycache__/__init__.cpython-38.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/mamba_local/mamba_ssm_local/__pycache__/__init__.cpython-38.pyc -------------------------------------------------------------------------------- /mamba_local/mamba_ssm_local/causal_conv1d_local/AUTHORS: -------------------------------------------------------------------------------- 1 | Tri Dao, tri@tridao.me 2 | -------------------------------------------------------------------------------- /mamba_local/mamba_ssm_local/causal_conv1d_local/LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/mamba_local/mamba_ssm_local/causal_conv1d_local/LICENSE -------------------------------------------------------------------------------- /mamba_local/mamba_ssm_local/causal_conv1d_local/README.md: -------------------------------------------------------------------------------- 1 | # Causal depthwise conv1d in CUDA with a PyTorch interface 2 | -------------------------------------------------------------------------------- /mamba_local/mamba_ssm_local/causal_conv1d_local/causal_conv1d/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/mamba_local/mamba_ssm_local/causal_conv1d_local/causal_conv1d/__init__.py -------------------------------------------------------------------------------- /mamba_local/mamba_ssm_local/causal_conv1d_local/causal_conv1d/__pycache__/__init__.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/mamba_local/mamba_ssm_local/causal_conv1d_local/causal_conv1d/__pycache__/__init__.cpython-37.pyc -------------------------------------------------------------------------------- /mamba_local/mamba_ssm_local/causal_conv1d_local/causal_conv1d/__pycache__/__init__.cpython-38.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/mamba_local/mamba_ssm_local/causal_conv1d_local/causal_conv1d/__pycache__/__init__.cpython-38.pyc -------------------------------------------------------------------------------- /mamba_local/mamba_ssm_local/causal_conv1d_local/causal_conv1d/causal_conv1d_interface.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/mamba_local/mamba_ssm_local/causal_conv1d_local/causal_conv1d/causal_conv1d_interface.py -------------------------------------------------------------------------------- /mamba_local/mamba_ssm_local/causal_conv1d_local/csrc/causal_conv1d.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/mamba_local/mamba_ssm_local/causal_conv1d_local/csrc/causal_conv1d.cpp -------------------------------------------------------------------------------- /mamba_local/mamba_ssm_local/causal_conv1d_local/csrc/causal_conv1d.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/mamba_local/mamba_ssm_local/causal_conv1d_local/csrc/causal_conv1d.h -------------------------------------------------------------------------------- /mamba_local/mamba_ssm_local/causal_conv1d_local/csrc/causal_conv1d_bwd.cu: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/mamba_local/mamba_ssm_local/causal_conv1d_local/csrc/causal_conv1d_bwd.cu -------------------------------------------------------------------------------- /mamba_local/mamba_ssm_local/causal_conv1d_local/csrc/causal_conv1d_common.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/mamba_local/mamba_ssm_local/causal_conv1d_local/csrc/causal_conv1d_common.h -------------------------------------------------------------------------------- /mamba_local/mamba_ssm_local/causal_conv1d_local/csrc/causal_conv1d_fwd.cu: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/mamba_local/mamba_ssm_local/causal_conv1d_local/csrc/causal_conv1d_fwd.cu -------------------------------------------------------------------------------- /mamba_local/mamba_ssm_local/causal_conv1d_local/csrc/causal_conv1d_update.cu: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/mamba_local/mamba_ssm_local/causal_conv1d_local/csrc/causal_conv1d_update.cu -------------------------------------------------------------------------------- /mamba_local/mamba_ssm_local/causal_conv1d_local/csrc/static_switch.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/mamba_local/mamba_ssm_local/causal_conv1d_local/csrc/static_switch.h -------------------------------------------------------------------------------- /mamba_local/mamba_ssm_local/causal_conv1d_local/setup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/mamba_local/mamba_ssm_local/causal_conv1d_local/setup.py -------------------------------------------------------------------------------- /mamba_local/mamba_ssm_local/causal_conv1d_local/tests/test_causal_conv1d.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/mamba_local/mamba_ssm_local/causal_conv1d_local/tests/test_causal_conv1d.py -------------------------------------------------------------------------------- /mamba_local/mamba_ssm_local/models/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /mamba_local/mamba_ssm_local/models/__pycache__/__init__.cpython-38.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/mamba_local/mamba_ssm_local/models/__pycache__/__init__.cpython-38.pyc -------------------------------------------------------------------------------- /mamba_local/mamba_ssm_local/models/__pycache__/mixer_seq_simple.cpython-38.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/mamba_local/mamba_ssm_local/models/__pycache__/mixer_seq_simple.cpython-38.pyc -------------------------------------------------------------------------------- /mamba_local/mamba_ssm_local/models/mixer_seq_simple.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/mamba_local/mamba_ssm_local/models/mixer_seq_simple.py -------------------------------------------------------------------------------- /mamba_local/mamba_ssm_local/modules/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /mamba_local/mamba_ssm_local/modules/__pycache__/__init__.cpython-38.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/mamba_local/mamba_ssm_local/modules/__pycache__/__init__.cpython-38.pyc -------------------------------------------------------------------------------- /mamba_local/mamba_ssm_local/modules/__pycache__/mamba_simple.cpython-38.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/mamba_local/mamba_ssm_local/modules/__pycache__/mamba_simple.cpython-38.pyc -------------------------------------------------------------------------------- /mamba_local/mamba_ssm_local/modules/mamba_simple.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/mamba_local/mamba_ssm_local/modules/mamba_simple.py -------------------------------------------------------------------------------- /mamba_local/mamba_ssm_local/ops/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /mamba_local/mamba_ssm_local/ops/__pycache__/__init__.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/mamba_local/mamba_ssm_local/ops/__pycache__/__init__.cpython-37.pyc -------------------------------------------------------------------------------- /mamba_local/mamba_ssm_local/ops/__pycache__/__init__.cpython-38.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/mamba_local/mamba_ssm_local/ops/__pycache__/__init__.cpython-38.pyc -------------------------------------------------------------------------------- /mamba_local/mamba_ssm_local/ops/__pycache__/selective_scan_interface.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/mamba_local/mamba_ssm_local/ops/__pycache__/selective_scan_interface.cpython-37.pyc -------------------------------------------------------------------------------- /mamba_local/mamba_ssm_local/ops/__pycache__/selective_scan_interface.cpython-38.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/mamba_local/mamba_ssm_local/ops/__pycache__/selective_scan_interface.cpython-38.pyc -------------------------------------------------------------------------------- /mamba_local/mamba_ssm_local/ops/selective_scan_interface.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/mamba_local/mamba_ssm_local/ops/selective_scan_interface.py -------------------------------------------------------------------------------- /mamba_local/mamba_ssm_local/ops/triton/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /mamba_local/mamba_ssm_local/ops/triton/__pycache__/__init__.cpython-38.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/mamba_local/mamba_ssm_local/ops/triton/__pycache__/__init__.cpython-38.pyc -------------------------------------------------------------------------------- /mamba_local/mamba_ssm_local/ops/triton/__pycache__/layernorm.cpython-38.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/mamba_local/mamba_ssm_local/ops/triton/__pycache__/layernorm.cpython-38.pyc -------------------------------------------------------------------------------- /mamba_local/mamba_ssm_local/ops/triton/__pycache__/selective_state_update.cpython-38.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/mamba_local/mamba_ssm_local/ops/triton/__pycache__/selective_state_update.cpython-38.pyc -------------------------------------------------------------------------------- /mamba_local/mamba_ssm_local/ops/triton/layernorm.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/mamba_local/mamba_ssm_local/ops/triton/layernorm.py -------------------------------------------------------------------------------- /mamba_local/mamba_ssm_local/ops/triton/selective_state_update.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/mamba_local/mamba_ssm_local/ops/triton/selective_state_update.py -------------------------------------------------------------------------------- /mamba_local/mamba_ssm_local/utils/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /mamba_local/mamba_ssm_local/utils/generation.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/mamba_local/mamba_ssm_local/utils/generation.py -------------------------------------------------------------------------------- /mamba_local/mamba_ssm_local/utils/hf.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/mamba_local/mamba_ssm_local/utils/hf.py -------------------------------------------------------------------------------- /mamba_local/setup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/mamba_local/setup.py -------------------------------------------------------------------------------- /mamba_local/test_mamba_module.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/mamba_local/test_mamba_module.py -------------------------------------------------------------------------------- /mamba_local/tests/ops/test_selective_scan.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/mamba_local/tests/ops/test_selective_scan.py -------------------------------------------------------------------------------- /mamba_local/tests/ops/triton/test_selective_state_update.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/mamba_local/tests/ops/triton/test_selective_state_update.py -------------------------------------------------------------------------------- /model/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /model/__pycache__/__init__.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/model/__pycache__/__init__.cpython-37.pyc -------------------------------------------------------------------------------- /model/__pycache__/__init__.cpython-38.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/model/__pycache__/__init__.cpython-38.pyc -------------------------------------------------------------------------------- /model/__pycache__/basic.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/model/__pycache__/basic.cpython-37.pyc -------------------------------------------------------------------------------- /model/__pycache__/basic.cpython-38.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/model/__pycache__/basic.cpython-38.pyc -------------------------------------------------------------------------------- /model/__pycache__/model_1.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/model/__pycache__/model_1.cpython-37.pyc -------------------------------------------------------------------------------- /model/__pycache__/model_para.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/model/__pycache__/model_para.cpython-37.pyc -------------------------------------------------------------------------------- /model/__pycache__/model_para.cpython-38.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/model/__pycache__/model_para.cpython-38.pyc -------------------------------------------------------------------------------- /model/__pycache__/residual.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/model/__pycache__/residual.cpython-37.pyc -------------------------------------------------------------------------------- /model/__pycache__/residual.cpython-38.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/model/__pycache__/residual.cpython-38.pyc -------------------------------------------------------------------------------- /model/basic.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/model/basic.py -------------------------------------------------------------------------------- /model/model_para.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/model/model_para.py -------------------------------------------------------------------------------- /model/monitor.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/model/monitor.py -------------------------------------------------------------------------------- /model/residual.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/model/residual.py -------------------------------------------------------------------------------- /model/squeeze_excite.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/model/squeeze_excite.py -------------------------------------------------------------------------------- /results1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/results1.png -------------------------------------------------------------------------------- /results2.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/results2.png -------------------------------------------------------------------------------- /src/SwinUMamba.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/src/SwinUMamba.py -------------------------------------------------------------------------------- /src/data_check.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/src/data_check.py -------------------------------------------------------------------------------- /src/data_provider_labeled.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/src/data_provider_labeled.py -------------------------------------------------------------------------------- /src/data_visual.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/src/data_visual.py -------------------------------------------------------------------------------- /src/engine_finetune.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/src/engine_finetune.py -------------------------------------------------------------------------------- /src/engine_finetune2.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/src/engine_finetune2.py -------------------------------------------------------------------------------- /src/engine_pretrain.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/src/engine_pretrain.py -------------------------------------------------------------------------------- /src/engine_pretrain_autoregress.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/src/engine_pretrain_autoregress.py -------------------------------------------------------------------------------- /src/eval.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/src/eval.py -------------------------------------------------------------------------------- /src/eval_signle.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/src/eval_signle.py -------------------------------------------------------------------------------- /src/eval_single_25.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/src/eval_single_25.py -------------------------------------------------------------------------------- /src/inference.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/src/inference.py -------------------------------------------------------------------------------- /src/inference_monai.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/src/inference_monai.py -------------------------------------------------------------------------------- /src/launch.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/src/launch.json -------------------------------------------------------------------------------- /src/main_finetune.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/src/main_finetune.py -------------------------------------------------------------------------------- /src/main_finetune2.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/src/main_finetune2.py -------------------------------------------------------------------------------- /src/main_finetune_mamba.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/src/main_finetune_mamba.py -------------------------------------------------------------------------------- /src/main_finetune_small.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/src/main_finetune_small.py -------------------------------------------------------------------------------- /src/main_pretrain.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/src/main_pretrain.py -------------------------------------------------------------------------------- /src/main_pretrain_autoregress.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/src/main_pretrain_autoregress.py -------------------------------------------------------------------------------- /src/model_superhuman2.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/src/model_superhuman2.py -------------------------------------------------------------------------------- /src/model_superhuman_pea.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/src/model_superhuman_pea.py -------------------------------------------------------------------------------- /src/model_unetr.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/src/model_unetr.py -------------------------------------------------------------------------------- /src/model_unetr2.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/src/model_unetr2.py -------------------------------------------------------------------------------- /src/model_unetr2_variant.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/src/model_unetr2_variant.py -------------------------------------------------------------------------------- /src/model_vit_3d.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/src/model_vit_3d.py -------------------------------------------------------------------------------- /src/model_vit_3d_varient.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/src/model_vit_3d_varient.py -------------------------------------------------------------------------------- /src/models_mamba.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/src/models_mamba.py -------------------------------------------------------------------------------- /src/provider_valid.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/src/provider_valid.py -------------------------------------------------------------------------------- /src/run_MEC_seg.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/src/run_MEC_seg.sh -------------------------------------------------------------------------------- /src/run_mamba_mae.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/src/run_mamba_mae.sh -------------------------------------------------------------------------------- /src/run_mamba_mae_AR.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/src/run_mamba_mae_AR.sh -------------------------------------------------------------------------------- /src/run_mamba_seg.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/src/run_mamba_seg.sh -------------------------------------------------------------------------------- /src/run_parallel.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/src/run_parallel.sh -------------------------------------------------------------------------------- /src/run_parallel_gaussian.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/src/run_parallel_gaussian.sh -------------------------------------------------------------------------------- /src/run_parallel_superhuman.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/src/run_parallel_superhuman.sh -------------------------------------------------------------------------------- /src/segmamba.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/src/segmamba.py -------------------------------------------------------------------------------- /src/segmamba_ar.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/src/segmamba_ar.py -------------------------------------------------------------------------------- /src/segmamba_deep.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/src/segmamba_deep.py -------------------------------------------------------------------------------- /src/segmamba_small.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/src/segmamba_small.py -------------------------------------------------------------------------------- /src/segmamba_variant.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/src/segmamba_variant.py -------------------------------------------------------------------------------- /src/test_aff_img.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/src/test_aff_img.png -------------------------------------------------------------------------------- /src/test_raw_img.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/src/test_raw_img.png -------------------------------------------------------------------------------- /src/test_segmamba.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/src/test_segmamba.py -------------------------------------------------------------------------------- /src/unet3d_mala.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/src/unet3d_mala.py -------------------------------------------------------------------------------- /util_mamba/MultiScaleAttention.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/util_mamba/MultiScaleAttention.py -------------------------------------------------------------------------------- /util_mamba/__pycache__/MultiScaleAttention.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/util_mamba/__pycache__/MultiScaleAttention.cpython-37.pyc -------------------------------------------------------------------------------- /util_mamba/__pycache__/datasets.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/util_mamba/__pycache__/datasets.cpython-37.pyc -------------------------------------------------------------------------------- /util_mamba/__pycache__/datasets.cpython-38.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/util_mamba/__pycache__/datasets.cpython-38.pyc -------------------------------------------------------------------------------- /util_mamba/__pycache__/lr_decay.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/util_mamba/__pycache__/lr_decay.cpython-37.pyc -------------------------------------------------------------------------------- /util_mamba/__pycache__/lr_decay.cpython-38.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/util_mamba/__pycache__/lr_decay.cpython-38.pyc -------------------------------------------------------------------------------- /util_mamba/__pycache__/lr_sched.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/util_mamba/__pycache__/lr_sched.cpython-37.pyc -------------------------------------------------------------------------------- /util_mamba/__pycache__/lr_sched.cpython-38.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/util_mamba/__pycache__/lr_sched.cpython-38.pyc -------------------------------------------------------------------------------- /util_mamba/__pycache__/misc.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/util_mamba/__pycache__/misc.cpython-37.pyc -------------------------------------------------------------------------------- /util_mamba/__pycache__/misc.cpython-38.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/util_mamba/__pycache__/misc.cpython-38.pyc -------------------------------------------------------------------------------- /util_mamba/__pycache__/pos_embed.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/util_mamba/__pycache__/pos_embed.cpython-37.pyc -------------------------------------------------------------------------------- /util_mamba/__pycache__/pos_embed.cpython-38.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/util_mamba/__pycache__/pos_embed.cpython-38.pyc -------------------------------------------------------------------------------- /util_mamba/crop.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/util_mamba/crop.py -------------------------------------------------------------------------------- /util_mamba/datasets.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/util_mamba/datasets.py -------------------------------------------------------------------------------- /util_mamba/lars.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/util_mamba/lars.py -------------------------------------------------------------------------------- /util_mamba/lr_decay.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/util_mamba/lr_decay.py -------------------------------------------------------------------------------- /util_mamba/lr_sched.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/util_mamba/lr_sched.py -------------------------------------------------------------------------------- /util_mamba/misc.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/util_mamba/misc.py -------------------------------------------------------------------------------- /util_mamba/pos_embed.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/util_mamba/pos_embed.py -------------------------------------------------------------------------------- /utils/aff_util.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/utils/aff_util.py -------------------------------------------------------------------------------- /utils/affine.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/utils/affine.py -------------------------------------------------------------------------------- /utils/affinity_official.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/utils/affinity_official.py -------------------------------------------------------------------------------- /utils/affinity_ours.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/utils/affinity_ours.py -------------------------------------------------------------------------------- /utils/augmentation.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/utils/augmentation.py -------------------------------------------------------------------------------- /utils/augmentation_affine.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/utils/augmentation_affine.py -------------------------------------------------------------------------------- /utils/consistency_aug.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/utils/consistency_aug.py -------------------------------------------------------------------------------- /utils/coordinate.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/utils/coordinate.py -------------------------------------------------------------------------------- /utils/encoder_dict.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/utils/encoder_dict.py -------------------------------------------------------------------------------- /utils/fragment.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/utils/fragment.py -------------------------------------------------------------------------------- /utils/gen_pseudo.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/utils/gen_pseudo.py -------------------------------------------------------------------------------- /utils/lmc.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/utils/lmc.py -------------------------------------------------------------------------------- /utils/malis_loss.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/utils/malis_loss.py -------------------------------------------------------------------------------- /utils/mc_baselines.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/utils/mc_baselines.py -------------------------------------------------------------------------------- /utils/optim_weight_ema.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/utils/optim_weight_ema.py -------------------------------------------------------------------------------- /utils/seeds_func.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/utils/seeds_func.py -------------------------------------------------------------------------------- /utils/seg_util.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/utils/seg_util.py -------------------------------------------------------------------------------- /utils/shift_channels.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/utils/shift_channels.py -------------------------------------------------------------------------------- /utils/show.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/utils/show.py -------------------------------------------------------------------------------- /utils/torch_utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/utils/torch_utils.py -------------------------------------------------------------------------------- /utils/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/utils/utils.py -------------------------------------------------------------------------------- /visual_results.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ydchen0806/TokenUnify/HEAD/visual_results.png --------------------------------------------------------------------------------