├── .gitignore ├── README.md ├── __init__.py ├── configs ├── .config_unet3d_3963.py.swp ├── __init__.py ├── config │ ├── __init__.py │ ├── config.py │ └── util.py └── config_unet3d.py ├── data_prepare ├── __init__.py ├── data_loader │ ├── __init__.py │ ├── data_loader.py │ ├── dataset_heart17.py │ ├── three_dim │ │ ├── NumpyDataLoader.py │ │ ├── __init__.py │ │ └── data_augmentation.py │ └── two_dim │ │ ├── NumpyDataLoader.py │ │ ├── __init__.py │ │ └── data_augmentation.py ├── data_preprocess │ ├── preprocess_heart17.py │ └── preprocessing.py └── validation_splits │ ├── create_splits.py │ └── create_splits_heart17.py ├── experiment_setup ├── UNetExperiment3D.py ├── __init__.py └── experiment_base │ ├── __init__.py │ ├── experiment_log.py │ └── pytorch_experiment.py ├── network_models ├── RecursiveUNet.py ├── RecursiveUNet3D.py ├── SCN3D.py └── UNET.py ├── train.py └── util ├── SourcePacker.py ├── __init__.py ├── config.py ├── file_and_folder_operations.py ├── make_dot.py ├── 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