├── LICENSE ├── README.md └── unimol ├── __init__.py ├── data ├── __init__.py ├── add_2d_conformer_dataset.py ├── atom_type_dataset.py ├── conformer_sample_dataset.py ├── coord_pad_dataset.py ├── cropping_dataset.py ├── data_utils.py ├── distance_dataset.py ├── from_str_dataset.py ├── key_dataset.py ├── lmdb_dataset.py ├── mask_points_dataset.py ├── normalize_dataset.py ├── prepend_and_append_2d_dataset.py ├── remove_hydrogen_dataset.py └── tta_dataset.py ├── infer.py ├── losses ├── __init__.py ├── conf_gen.py ├── cross_entropy.py ├── docking_pose.py ├── reg_loss.py ├── unimol.py └── unimol_MAE.py ├── models ├── __init__.py ├── conf_gen.py ├── docking_pose.py ├── transformer_encoder_with_pair.py ├── unimol.py └── unimol_MAE_padding.py ├── tasks ├── __init__.py ├── docking_pose.py ├── unimol.py ├── unimol_conf_gen.py ├── unimol_finetune.py ├── unimol_pocket.py └── unimol_pocket_finetune.py └── utils ├── __init__.py ├── conf_gen_cal_metrics.py ├── conformer_model.py ├── 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