├── README.md ├── config ├── codeml.ctl └── software.config ├── example ├── 00.run.sh ├── example.Rscript ├── test.cds.fa └── test.pep.fa ├── setup.pl └── src ├── Fasta2Phylip.pl ├── calculate_ks.pl ├── calculate_ks.single.pl ├── collect_ks.pl ├── conver_dist.pl ├── hclust_ks.pl ├── merge_final_ks.pl ├── phase.id.pl ├── phase.mcloutp2orthomcl.format.pl ├── phase.new_sub_GF_seq.pl ├── protein_blastp_cluster.pl ├── protein_mmseqs2_cluster.pl ├── split_large_gf.pl ├── split_seq.pl ├── split_seq.pl.bak ├── sub_ks_family.pl └── wgddetector.pl /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/yongzhiyang2012/WGDdetector/HEAD/README.md -------------------------------------------------------------------------------- /config/codeml.ctl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/yongzhiyang2012/WGDdetector/HEAD/config/codeml.ctl 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