├── .gitignore ├── README.md ├── Radiomics ├── Coliage │ ├── bratumia-extractcoliage.py │ ├── hdglio-extractcoliage.py │ └── resampleprep.sh └── PyRadiomics │ ├── Params.yaml │ ├── featextract_deepbratumia.py │ └── featextract_hdglio.py ├── Segmentation ├── hd-glio-custom │ └── run.py └── runhdglio.sh └── utils └── statespace.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ysuter/gbm-data-longitudinal/HEAD/.gitignore -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ysuter/gbm-data-longitudinal/HEAD/README.md -------------------------------------------------------------------------------- /Radiomics/Coliage/bratumia-extractcoliage.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ysuter/gbm-data-longitudinal/HEAD/Radiomics/Coliage/bratumia-extractcoliage.py -------------------------------------------------------------------------------- /Radiomics/Coliage/hdglio-extractcoliage.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ysuter/gbm-data-longitudinal/HEAD/Radiomics/Coliage/hdglio-extractcoliage.py -------------------------------------------------------------------------------- /Radiomics/Coliage/resampleprep.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ysuter/gbm-data-longitudinal/HEAD/Radiomics/Coliage/resampleprep.sh -------------------------------------------------------------------------------- /Radiomics/PyRadiomics/Params.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ysuter/gbm-data-longitudinal/HEAD/Radiomics/PyRadiomics/Params.yaml -------------------------------------------------------------------------------- /Radiomics/PyRadiomics/featextract_deepbratumia.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ysuter/gbm-data-longitudinal/HEAD/Radiomics/PyRadiomics/featextract_deepbratumia.py -------------------------------------------------------------------------------- /Radiomics/PyRadiomics/featextract_hdglio.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ysuter/gbm-data-longitudinal/HEAD/Radiomics/PyRadiomics/featextract_hdglio.py -------------------------------------------------------------------------------- /Segmentation/hd-glio-custom/run.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ysuter/gbm-data-longitudinal/HEAD/Segmentation/hd-glio-custom/run.py -------------------------------------------------------------------------------- /Segmentation/runhdglio.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ysuter/gbm-data-longitudinal/HEAD/Segmentation/runhdglio.sh -------------------------------------------------------------------------------- /utils/statespace.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ysuter/gbm-data-longitudinal/HEAD/utils/statespace.py --------------------------------------------------------------------------------