├── .gitignore ├── .gitmodules ├── CMakeLists.txt ├── LICENSE ├── PMTools.m ├── Profiler.nb ├── README.md ├── autorun_list.sh ├── cmake_modules ├── FindMKL.cmake └── FindTBB.cmake ├── include ├── bct_constructors.h ├── bct_kernel_type.h ├── deprecated │ ├── all_pairs_tpe.h │ ├── barnes_hut_tpe_6d.h │ ├── block_cluster_tree.h │ └── static_obstacle.h ├── derivative_assembler.h ├── dropdown_strings.h ├── energy │ ├── all_energies.h │ ├── boundary_curvature.h │ ├── boundary_length.h │ ├── coulomb.h │ ├── implicit_attractor.h │ ├── implicit_obstacle.h │ ├── soft_area_constraint.h │ ├── soft_volume_constraint.h │ ├── squared_error.h │ ├── total_area_potential.h │ ├── total_volume_potential.h │ ├── tp_obstacle_all_pairs.h │ ├── tp_obstacle_all_pairs_pr.h │ ├── tp_obstacle_barnes_hut_0.h │ ├── tp_obstacle_barnes_hut_pr_0.h │ ├── tp_obstacle_multipole_0.h │ ├── tp_obstacle_multipole_nl_0.h │ ├── tp_obstacle_multipole_pr_0.h │ ├── tp_pointcloud_obstacle_barnes_hut_0.h │ ├── tp_pointnormalcloud_obstacle_barnes_hut_0.h │ ├── tpe_all_pairs.h │ ├── tpe_all_pairs_pr.h │ ├── tpe_barnes_hut_0.h │ ├── tpe_barnes_hut_pr_0.h │ ├── tpe_kernel.h │ ├── tpe_multipole_0.h │ ├── tpe_multipole_nl_0.h │ ├── tpe_multipole_pr_0.h │ └── willmore_energy.h ├── fractional_laplacian.h ├── helpers.h ├── implicit │ ├── implicit_surface.h │ └── simple_surfaces.h ├── interaction_data.h ├── line_search.h ├── main.h ├── main2.h ├── main_picking.h ├── marchingcubes │ ├── CIsoSurface.h │ └── Vectors.h ├── matrix_utils.h ├── metric_term.h ├── obj_writer.h ├── optimized_bct.h ├── optimized_bct_types.h ├── optimized_cluster_tree.h ├── profiler.h ├── remeshing │ ├── dynamic_remesher.h │ └── remeshing.h ├── rsurface_types.h ├── scene_file.h ├── sobolev │ ├── all_constraints.h │ ├── bct_matrix_replacement.h │ ├── bqn_lbfgs.h │ ├── constraints.h │ ├── constraints │ │ ├── barycenter.h │ │ ├── barycenter_components.h │ │ ├── scaling.h │ │ ├── total_area.h │ │ ├── total_volume.h │ │ ├── vertex_normal.h │ │ └── vertex_pin.h │ ├── h1.h │ ├── h1_lbfgs.h │ ├── h2.h │ ├── hs.h │ ├── hs_iterative.h │ ├── hs_ncg.h │ ├── hs_operators.h │ ├── hs_schur.h │ ├── l2.h │ ├── l2_lbfgs.h │ ├── lbfgs.h │ └── sparse_factorization.h ├── spatial │ ├── bvh_6d.h │ ├── bvh_data.h │ ├── bvh_types.h │ ├── convolution.h │ ├── convolution_kernel.h │ └── data_tree.h ├── surface_derivatives.h ├── surface_energy.h ├── surface_flow.h └── vertex_data_wrapper.h ├── make_mp4.sh ├── make_speedup_mp4.sh ├── mp4_to_gif.sh ├── notes ├── .gitignore ├── pathplan.png ├── pitch.tex ├── schur.tex └── sobolev.tex ├── overlay_image.sh ├── overlay_text.sh ├── repulsive-surfaces.code-workspace ├── scenes ├── AlexanderHorned │ ├── alexander.obj │ └── scene.txt ├── BorromeanRings │ ├── borromean.obj │ └── scene.txt ├── Boundary │ ├── chimney-badmesh.obj │ ├── chimney-tall.obj │ ├── chimney.obj │ ├── scene-tall.txt │ └── scene.txt ├── BrokenFigureEight │ ├── BrokenFigureEightTubeMesh_11740F.obj │ ├── scene.txt │ └── scene_soft.txt ├── Bunny │ ├── bunny-10p.obj │ ├── bunny-25p.obj │ ├── bunny-50p.obj │ ├── bunny-high.obj │ ├── bunny-mid.obj │ ├── bunny.obj │ ├── scene-soft.txt │ ├── scene.txt │ └── scene_willmore.txt ├── CoarseInterpolation │ ├── scene10.txt │ ├── scene100.txt │ └── scene1000.txt ├── Collisions │ └── scene.txt ├── DoubleTorusAndRing │ ├── DoubleTorusAndRingMesh_14464F.obj │ └── scene.txt ├── EntangledDoubleTorus │ ├── boxscene.txt │ ├── doubletorus.obj │ ├── doubletorus10k.obj │ ├── doubletorus35k.obj │ ├── scene-bench.txt │ ├── scene.txt │ ├── scene_attractor.txt │ ├── scene_soft.txt │ ├── scene_willmore.txt │ ├── scene_willmore_tpe.txt │ └── tilted.obj ├── FORMAT.txt ├── Hamburger │ ├── cube1.5.obj │ ├── hamburger.obj │ ├── scene-nobox.txt │ └── scene.txt ├── HandcuffsPole │ ├── endscene.txt │ ├── scene.txt │ ├── start_fine.obj │ └── untangled_fine.obj ├── HopfLink │ ├── hopf.obj │ └── scene.txt ├── KleinBottle │ ├── klein_bottle.obj │ ├── klein_bottle_2.obj │ ├── klein_bottle_blocky.obj │ └── scene.txt ├── Lowres │ ├── scene.txt │ └── tube_regular.obj ├── LungGrowing │ ├── bounding.obj │ ├── bounding2.obj │ ├── scene-lung.txt │ ├── scene.txt │ └── sphere.obj ├── Reconstruction │ ├── bunny-scaled.obj │ ├── scene_bunny.txt │ ├── scene_volume.txt │ ├── sphere20k.obj │ ├── sphere80k-half.obj │ ├── sphere80k.obj │ └── spot_triangulated.obj ├── SlideOffBar │ ├── scene.txt │ ├── scene_beginning.txt │ ├── scene_end.txt │ └── start.obj ├── TorusWeaveTest │ ├── TorusWeave_1_3_low.obj │ └── scene.txt └── Walnut │ ├── inside.mtl │ ├── inside.obj │ ├── scene.txt │ ├── shell2.mtl │ ├── shell2.obj │ ├── walnut_shell.mtl │ └── walnut_shell.obj ├── src ├── deprecated │ ├── all_pairs_tpe.cpp │ ├── barnes_hut_tpe_6d.cpp │ ├── block_cluster_tree.cpp │ └── static_obstacle.cpp ├── derivative_assembler.cpp ├── energy │ ├── boundary_curvature.cpp │ ├── boundary_length.cpp │ ├── coulomb.cpp │ ├── implicit_attractor.cpp │ ├── implicit_obstacle.cpp │ ├── soft_area_constraint.cpp │ ├── soft_volume_constraint.cpp │ ├── squared_error.cpp │ ├── total_area_potential.cpp │ ├── total_volume_potential.cpp │ ├── tp_obstacle_all_pairs.cpp │ ├── tp_obstacle_all_pairs_pr.cpp │ ├── tp_obstacle_barnes_hut_0.cpp │ ├── tp_obstacle_barnes_hut_pr_0.cpp │ ├── tp_obstacle_multipole_0.cpp │ ├── tp_obstacle_multipole_nl_0.cpp │ ├── tp_obstacle_multipole_pr_0.cpp │ ├── tp_pointcloud_obstacle_barnes_hut_0.cpp │ ├── tp_pointnormalcloud_obstacle_barnes_hut_0.cpp │ ├── tpe_all_pairs.cpp │ ├── tpe_all_pairs_pr.cpp │ ├── tpe_barnes_hut_0.cpp │ ├── tpe_barnes_hut_pr_0.cpp │ ├── tpe_kernel.cpp │ ├── tpe_multipole_0.cpp │ ├── tpe_multipole_nl_0.cpp │ ├── tpe_multipole_pr_0.cpp │ └── willmore_energy.cpp ├── fractional_laplacian.cpp ├── implicit │ ├── implicit_surface.cpp │ └── simple_surfaces.cpp ├── interaction_data.cpp ├── line_search.cpp ├── main.cpp ├── main2.cpp ├── marchingcubes │ ├── CIsoSurface.cpp │ └── Vectors.cpp ├── matrix_utils.cpp ├── metric_term.cpp ├── obj_writer.cpp ├── optimized_bct.cpp ├── optimized_bct_types.cpp ├── optimized_cluster_tree.cpp ├── profiler.cpp ├── remeshing │ ├── dynamic_remesher.cpp │ └── remeshing.cpp ├── scene_file.cpp ├── sobolev │ ├── bqn_lbfgs.cpp │ ├── constraints.cpp │ ├── constraints │ │ ├── barycenter.cpp │ │ ├── barycenter_components.cpp │ │ ├── scaling.cpp │ │ ├── total_area.cpp │ │ ├── total_volume.cpp │ │ ├── vertex_normal.cpp │ │ └── vertex_pin.cpp │ ├── h1.cpp │ ├── h1_lbfgs.cpp │ ├── h2.cpp │ ├── hs.cpp │ ├── hs_iterative.cpp │ ├── hs_ncg.cpp │ ├── hs_schur.cpp │ ├── l2_lbfgs.cpp │ └── lbfgs.cpp ├── spatial │ ├── bvh_6d.cpp │ ├── bvh_data.cpp │ └── convolution_kernel.cpp ├── surface_derivatives.cpp └── surface_flow.cpp └── timings.txt /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ythea/repulsive-surfaces/HEAD/.gitignore -------------------------------------------------------------------------------- /.gitmodules: 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