├── .Rbuildignore ├── .gitignore ├── CITATION.cff ├── CWGCNA.Rproj ├── DESCRIPTION ├── NAMESPACE ├── R ├── emethyl_clustering_new.R ├── emethyl_enrich.R ├── emethyl_limma.R ├── emethyl_mediation.R └── emethyl_wgcna.R ├── README.md ├── data ├── humanbacks.rda ├── keggnames.rda ├── mousebacks.rda └── summaryannotation.rda ├── inst └── extdata │ ├── placentabetas.rds │ └── placentapds.rds ├── man ├── corenrich.Rd ├── difffeatures.Rd ├── diffwgcna.Rd ├── featuresampling.Rd ├── geneanno.Rd ├── imputemeta.Rd ├── lassomediation.Rd ├── locidistribution.Rd ├── mediationmod.Rd ├── multiCCA.Rd ├── omicsclassifier.Rd ├── pairedensemblepredict.Rd ├── probeanno.Rd ├── probestogenes.Rd ├── sigdmrs.Rd ├── singlelassomediation.Rd ├── singlemediation.Rd ├── topoenrich.Rd └── wgcnacluster.Rd └── vignettes ├── Figure ├── tutorialfig1.png ├── tutorialfig2.png ├── tutorialfig3.png ├── tutorialfig4.png ├── tutorialfig5.png └── tutorialfig6.png ├── tutorial_CWGCNA.Rmd └── tutorial_CWGCNA.docx /.Rbuildignore: 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