├── AE ├── __init__.py ├── models.py ├── trainer.py └── utility.py ├── Doc └── overview.jpg ├── EMT_data ├── AE_EMT_normalized.csv.zip └── AE_EMT_time.csv ├── Input ├── Bifurcation.npy ├── EMT.npy ├── Lineage.npy └── Simulation.npy ├── LICENSE ├── Notebooks ├── AE.ipynb ├── Training.ipynb └── Visualization.ipynb ├── Output ├── Average_grad_d0.pdf ├── Average_jac_d0.pdf ├── ckpt.pth ├── ckpt_EMT.pth └── traj_3d.pdf ├── README.md ├── TIGON.py ├── plot_result.py └── utility.py /AE/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/yutongo/TIGON/HEAD/AE/__init__.py -------------------------------------------------------------------------------- /AE/models.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/yutongo/TIGON/HEAD/AE/models.py -------------------------------------------------------------------------------- /AE/trainer.py: 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