├── LICENSE ├── README.md ├── bin └── ideas └── src ├── preprocess ├── makefile └── prepareMatrix.cpp └── visualization ├── createGenomeTracks.R ├── draw.R ├── heatmap3.R └── runme.R /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/yuzhang123/IDEAS/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/yuzhang123/IDEAS/HEAD/README.md -------------------------------------------------------------------------------- /bin/ideas: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/yuzhang123/IDEAS/HEAD/bin/ideas -------------------------------------------------------------------------------- /src/preprocess/makefile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/yuzhang123/IDEAS/HEAD/src/preprocess/makefile -------------------------------------------------------------------------------- /src/preprocess/prepareMatrix.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/yuzhang123/IDEAS/HEAD/src/preprocess/prepareMatrix.cpp -------------------------------------------------------------------------------- /src/visualization/createGenomeTracks.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/yuzhang123/IDEAS/HEAD/src/visualization/createGenomeTracks.R -------------------------------------------------------------------------------- /src/visualization/draw.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/yuzhang123/IDEAS/HEAD/src/visualization/draw.R -------------------------------------------------------------------------------- /src/visualization/heatmap3.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/yuzhang123/IDEAS/HEAD/src/visualization/heatmap3.R -------------------------------------------------------------------------------- /src/visualization/runme.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/yuzhang123/IDEAS/HEAD/src/visualization/runme.R --------------------------------------------------------------------------------