├── DESCRIPTION ├── NAMESPACE ├── NEWS.txt ├── R ├── FIRE_plot.R ├── FIREcaller.R └── diff_interactions.R ├── README.md ├── inst └── extdata │ ├── LICENSE_juicer │ └── chrom_sizes.rda ├── man ├── FIRE_plot.Rd ├── FIREcaller.Rd └── InteractionCompare.Rd └── mappability.R /DESCRIPTION: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/yycunc/FIREcaller/HEAD/DESCRIPTION -------------------------------------------------------------------------------- /NAMESPACE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/yycunc/FIREcaller/HEAD/NAMESPACE -------------------------------------------------------------------------------- /NEWS.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/yycunc/FIREcaller/HEAD/NEWS.txt -------------------------------------------------------------------------------- /R/FIRE_plot.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/yycunc/FIREcaller/HEAD/R/FIRE_plot.R -------------------------------------------------------------------------------- /R/FIREcaller.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/yycunc/FIREcaller/HEAD/R/FIREcaller.R -------------------------------------------------------------------------------- /R/diff_interactions.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/yycunc/FIREcaller/HEAD/R/diff_interactions.R -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/yycunc/FIREcaller/HEAD/README.md -------------------------------------------------------------------------------- /inst/extdata/LICENSE_juicer: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/yycunc/FIREcaller/HEAD/inst/extdata/LICENSE_juicer -------------------------------------------------------------------------------- /inst/extdata/chrom_sizes.rda: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/yycunc/FIREcaller/HEAD/inst/extdata/chrom_sizes.rda -------------------------------------------------------------------------------- /man/FIRE_plot.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/yycunc/FIREcaller/HEAD/man/FIRE_plot.Rd -------------------------------------------------------------------------------- /man/FIREcaller.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/yycunc/FIREcaller/HEAD/man/FIREcaller.Rd -------------------------------------------------------------------------------- /man/InteractionCompare.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/yycunc/FIREcaller/HEAD/man/InteractionCompare.Rd -------------------------------------------------------------------------------- /mappability.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/yycunc/FIREcaller/HEAD/mappability.R --------------------------------------------------------------------------------