├── .gitignore ├── Dockerfile ├── README.md ├── datasets └── primates.nex ├── environment.yml ├── examples ├── primates.ipynb └── simuData.ipynb ├── phyloinfer ├── Loglikelihood.py ├── Logposterior.py ├── Logprior.py ├── __init__.py ├── branchManipulation.py ├── dataManipulation.py ├── phyloHMC.py ├── rateMatrix.py ├── refLeapfrog.py ├── resultAnalysis.py └── treeManipulation.py └── setup.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/zcrabbit/PhyloInfer/HEAD/.gitignore -------------------------------------------------------------------------------- /Dockerfile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/zcrabbit/PhyloInfer/HEAD/Dockerfile -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- 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