├── LICENSE ├── README.md ├── emb ├── gemb_CN.csv ├── gemb_bias_CN.csv ├── gemb_bias_normal.csv ├── gemb_normal.csv ├── geneSCF │ ├── gemb_d17_top_GO_BP.tsv │ ├── gemb_d22_top_GO_BP.tsv │ ├── gemb_d25_top_GO_BP.tsv │ ├── gemb_d35_bottom_GO_BP.tsv │ ├── gemb_d43_bottom_GO_BP.tsv │ └── gemb_d46_bottom_GO_BP.tsv ├── semb_CN.csv ├── semb_bias_CN.csv ├── semb_bias_normal.csv └── semb_normal.csv ├── ipynb ├── tcga_emb_dist.ipynb ├── tcga_emb_pca.ipynb ├── tcga_emb_subtyping.ipynb ├── tcga_iorespone.ipynb ├── tcga_plot_emb_som_pca_heatmap.ipynb ├── tcga_plot_gsea_compare.ipynb ├── tcga_som.ipynb ├── tcga_training_CN.ipynb └── tcga_training_normal.ipynb ├── load_data.py ├── ref ├── genes_gids.csv └── sid_ca.csv ├── train.py └── util.py /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/zeochoy/tcga-embedding/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: 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