├── .gitignore ├── LICENSE ├── README.md ├── animation ├── dynamics │ ├── dynamic.m │ ├── dynamic.mp4 │ ├── image001.png │ ├── image002.png │ ├── image003.png │ ├── image004.png │ ├── image005.png │ ├── image006.png │ ├── image007.png │ ├── image008.png │ ├── image009.png │ ├── image010.png │ ├── image011.png │ ├── image012.png │ ├── image013.png │ ├── image014.png │ ├── image015.png │ ├── image016.png │ ├── image017.png │ ├── image018.png │ ├── image019.png │ ├── image020.png │ ├── image021.png │ ├── image022.png │ ├── image023.png │ ├── image024.png │ ├── image025.png │ ├── image026.png │ ├── image027.png │ ├── image028.png │ ├── image029.png │ ├── image030.png │ ├── image031.png │ ├── image032.png │ ├── image033.png │ ├── image034.png │ ├── image035.png │ ├── image036.png │ ├── image037.png │ ├── image038.png │ ├── image039.png │ ├── image040.png │ ├── image041.png │ ├── image042.png │ ├── image043.png │ ├── image044.png │ ├── image045.png │ ├── image046.png │ ├── image047.png │ ├── image048.png │ ├── image049.png │ ├── image050.png │ ├── image051.png │ ├── image052.png │ ├── image053.png │ ├── image054.png │ ├── image055.png │ ├── image056.png │ ├── image057.png │ ├── image058.png │ ├── image059.png │ ├── image060.png │ ├── image061.png │ ├── image062.png │ ├── image063.png │ ├── image064.png │ ├── image065.png │ ├── image066.png │ ├── image067.png │ ├── image068.png │ ├── image069.png │ ├── image070.png │ ├── image071.png │ ├── image072.png │ ├── image073.png │ ├── image074.png │ ├── image075.png │ ├── image076.png │ ├── image077.png │ ├── image078.png │ ├── image079.png │ ├── image080.png │ ├── image081.png │ ├── image082.png │ ├── image083.png │ ├── image084.png │ ├── image085.png │ ├── image086.png │ ├── image087.png │ ├── image088.png │ ├── image089.png │ ├── image090.png │ ├── image091.png │ ├── image092.png │ ├── image093.png │ ├── image094.png │ ├── image095.png │ ├── image096.png │ ├── image097.png │ ├── image098.png │ ├── image099.png │ ├── image100.png │ ├── image101.png │ ├── movie_maker.sh │ ├── particle_plot.m │ ├── radius.txt │ ├── xyzlimits.m │ ├── xyzs0.txt │ ├── xyzs000.txt │ ├── xyzs001.txt │ ├── xyzs002.txt │ ├── xyzs003.txt │ ├── xyzs004.txt │ ├── xyzs005.txt │ ├── xyzs006.txt │ ├── xyzs007.txt │ ├── xyzs008.txt │ ├── xyzs009.txt │ ├── xyzs010.txt │ ├── xyzs011.txt │ ├── xyzs012.txt │ ├── xyzs013.txt │ ├── xyzs014.txt │ ├── xyzs015.txt │ ├── xyzs016.txt │ ├── xyzs017.txt │ ├── xyzs018.txt │ ├── xyzs019.txt │ ├── xyzs020.txt │ ├── xyzs021.txt │ ├── xyzs022.txt │ ├── xyzs023.txt │ ├── xyzs024.txt │ ├── xyzs025.txt │ ├── xyzs026.txt │ ├── xyzs027.txt │ ├── xyzs028.txt │ ├── xyzs029.txt │ ├── xyzs030.txt │ ├── xyzs031.txt │ ├── xyzs032.txt │ ├── xyzs033.txt │ ├── xyzs034.txt │ ├── xyzs035.txt │ ├── xyzs036.txt │ ├── xyzs037.txt │ ├── xyzs038.txt │ ├── xyzs039.txt │ ├── xyzs040.txt │ ├── xyzs041.txt │ ├── xyzs042.txt │ ├── xyzs043.txt │ ├── xyzs044.txt │ ├── xyzs045.txt │ ├── xyzs046.txt │ ├── xyzs047.txt │ ├── xyzs048.txt │ ├── xyzs049.txt │ ├── xyzs050.txt │ ├── xyzs051.txt │ ├── xyzs052.txt │ ├── xyzs053.txt │ ├── xyzs054.txt │ ├── xyzs055.txt │ ├── xyzs056.txt │ ├── xyzs057.txt │ ├── xyzs058.txt │ ├── xyzs059.txt │ ├── xyzs060.txt │ ├── xyzs061.txt │ ├── xyzs062.txt │ ├── xyzs063.txt │ ├── xyzs064.txt │ ├── xyzs065.txt │ ├── xyzs066.txt │ ├── xyzs067.txt │ ├── xyzs068.txt │ ├── xyzs069.txt │ ├── xyzs070.txt │ ├── xyzs071.txt │ ├── xyzs072.txt │ ├── xyzs073.txt │ ├── xyzs074.txt │ ├── xyzs075.txt │ ├── xyzs076.txt │ ├── xyzs077.txt │ ├── xyzs078.txt │ ├── xyzs079.txt │ ├── xyzs080.txt │ ├── xyzs081.txt │ ├── xyzs082.txt │ ├── xyzs083.txt │ ├── xyzs084.txt │ ├── xyzs085.txt │ ├── xyzs086.txt │ ├── xyzs087.txt │ ├── xyzs088.txt │ ├── xyzs089.txt │ ├── xyzs090.txt │ ├── xyzs091.txt │ ├── xyzs092.txt │ ├── xyzs093.txt │ ├── xyzs094.txt │ ├── xyzs095.txt │ ├── xyzs096.txt │ ├── xyzs097.txt │ ├── xyzs098.txt │ ├── xyzs099.txt │ └── xyzs100.txt └── thermal │ ├── backup-1231 │ ├── image00001.png │ ├── image00002.png │ ├── image00003.png │ ├── image00004.png │ ├── image00005.png │ ├── image00006.png │ ├── image00007.png │ ├── image00008.png │ ├── image00009.png │ ├── image00010.png │ ├── image00011.png │ ├── image00012.png │ ├── image00013.png │ ├── image00014.png │ ├── image00015.png │ ├── image00016.png │ ├── image00017.png │ ├── image00018.png │ ├── image00019.png │ ├── image00020.png │ ├── image00021.png │ ├── image00022.png │ ├── image00023.png │ ├── image00024.png │ ├── image00025.png │ ├── image00026.png │ ├── image00027.png │ ├── image00028.png │ ├── image00029.png │ ├── image00030.png │ ├── image00031.png │ ├── image00032.png │ ├── image00033.png │ ├── image00034.png │ ├── image00035.png │ ├── image00036.png │ ├── image00037.png │ ├── image00038.png │ ├── image00039.png │ ├── image00040.png │ ├── image00041.png │ ├── image00042.png │ ├── image00043.png │ ├── image00044.png │ ├── image00045.png │ ├── image00046.png │ ├── image00047.png │ ├── image00048.png │ ├── image00049.png │ ├── image00050.png │ ├── radius.txt │ ├── temperatures.txt │ ├── temperatures_0.txt │ ├── temperatures_02.txt │ ├── temperatures_1000.txt │ ├── temperatures_10000.txt │ ├── temperatures_11000.txt │ ├── temperatures_12000.txt │ ├── temperatures_13000.txt │ ├── temperatures_14000.txt │ ├── temperatures_15000.txt │ ├── temperatures_16000.txt │ ├── temperatures_17000.txt │ ├── temperatures_18000.txt │ ├── temperatures_19000.txt │ ├── temperatures_2000.txt │ ├── temperatures_20000.txt │ ├── temperatures_21000.txt │ ├── temperatures_22000.txt │ ├── temperatures_23000.txt │ ├── temperatures_24000.txt │ ├── temperatures_25000.txt │ ├── temperatures_26000.txt │ ├── temperatures_27000.txt │ ├── temperatures_28000.txt │ ├── temperatures_29000.txt │ ├── temperatures_3000.txt │ ├── temperatures_30000.txt │ ├── temperatures_31000.txt │ ├── temperatures_32000.txt │ ├── temperatures_33000.txt │ ├── temperatures_34000.txt │ ├── temperatures_35000.txt │ ├── temperatures_36000.txt │ ├── temperatures_37000.txt │ ├── temperatures_38000.txt │ ├── temperatures_39000.txt │ ├── temperatures_4000.txt │ ├── temperatures_40000.txt │ ├── temperatures_41000.txt │ ├── temperatures_42000.txt │ ├── temperatures_43000.txt │ ├── temperatures_44000.txt │ ├── temperatures_45000.txt │ ├── temperatures_46000.txt │ ├── temperatures_47000.txt │ ├── temperatures_48000.txt │ ├── temperatures_49000.txt │ ├── temperatures_5000.txt │ ├── temperatures_50000.txt │ ├── temperatures_51000.txt │ ├── temperatures_52000.txt │ ├── temperatures_53000.txt │ ├── temperatures_54000.txt │ ├── temperatures_55000.txt │ ├── temperatures_56000.txt │ ├── temperatures_57000.txt │ ├── temperatures_58000.txt │ ├── temperatures_59000.txt │ ├── temperatures_6000.txt │ ├── temperatures_60000.txt │ ├── temperatures_61000.txt │ ├── temperatures_62000.txt │ ├── temperatures_63000.txt │ ├── temperatures_64000.txt │ ├── temperatures_65000.txt │ ├── temperatures_66000.txt │ ├── temperatures_67000.txt │ ├── temperatures_68000.txt │ ├── temperatures_69000.txt │ ├── temperatures_7000.txt │ ├── temperatures_70000.txt │ ├── temperatures_71000.txt │ ├── temperatures_72000.txt │ ├── temperatures_73000.txt │ ├── temperatures_74000.txt │ ├── temperatures_75000.txt │ ├── temperatures_76000.txt │ ├── temperatures_77000.txt │ ├── temperatures_78000.txt │ ├── temperatures_79000.txt │ ├── temperatures_8000.txt │ ├── temperatures_80000.txt │ ├── temperatures_81000.txt │ ├── temperatures_82000.txt │ ├── temperatures_83000.txt │ ├── temperatures_84000.txt │ ├── temperatures_85000.txt │ ├── temperatures_86000.txt │ ├── temperatures_87000.txt │ ├── temperatures_88000.txt │ ├── temperatures_89000.txt │ ├── temperatures_9000.txt │ ├── temperatures_90000.txt │ ├── temperatures_91000.txt │ ├── temperatures_92000.txt │ ├── temperatures_93000.txt │ ├── temperatures_94000.txt │ ├── temperatures_95000.txt │ ├── temperatures_96000.txt │ ├── temperatures_97000.txt │ ├── temperatures_98000.txt │ ├── temperatures_99000.txt │ ├── temperatures_cuda.txt │ ├── thermal.mp4 │ └── xyzs.txt │ ├── image00001.png │ ├── image00002.png │ ├── image00003.png │ ├── image00004.png │ ├── image00005.png │ ├── image00006.png │ ├── image00007.png │ ├── image00008.png │ ├── image00009.png │ ├── image00010.png │ ├── image00011.png │ ├── image00012.png │ ├── image00013.png │ ├── image00014.png │ ├── image00015.png │ ├── image00016.png │ ├── image00017.png │ ├── image00018.png │ ├── image00019.png │ ├── image00020.png │ ├── image00021.png │ ├── image00022.png │ ├── image00023.png │ ├── image00024.png │ ├── image00025.png │ ├── image00026.png │ ├── image00027.png │ ├── image00028.png │ ├── image00029.png │ ├── image00030.png │ ├── image00031.png │ ├── image00032.png │ ├── image00033.png │ ├── image00034.png │ ├── image00035.png │ ├── image00036.png │ ├── image00037.png │ ├── image00038.png │ ├── image00039.png │ ├── image00040.png │ ├── image00041.png │ ├── image00042.png │ ├── image00043.png │ ├── image00044.png │ ├── image00045.png │ ├── image00046.png │ ├── image00047.png │ ├── image00048.png │ ├── image00049.png │ ├── image00050.png │ ├── movie_maker.sh │ ├── radius.txt │ ├── temperature_plot.m │ ├── temperatures.txt │ ├── temperatures_0.txt │ ├── temperatures_1000.txt │ ├── temperatures_10000.txt │ ├── temperatures_11000.txt │ ├── temperatures_12000.txt │ ├── temperatures_13000.txt │ ├── temperatures_14000.txt │ ├── temperatures_15000.txt │ ├── temperatures_16000.txt │ ├── temperatures_17000.txt │ ├── temperatures_18000.txt │ ├── temperatures_19000.txt │ ├── temperatures_2000.txt │ ├── temperatures_20000.txt │ ├── temperatures_21000.txt │ ├── temperatures_22000.txt │ ├── temperatures_23000.txt │ ├── temperatures_24000.txt │ ├── temperatures_25000.txt │ ├── temperatures_26000.txt │ ├── temperatures_27000.txt │ ├── temperatures_28000.txt │ ├── temperatures_29000.txt │ ├── temperatures_3000.txt │ ├── temperatures_30000.txt │ ├── temperatures_31000.txt │ ├── temperatures_32000.txt │ ├── temperatures_33000.txt │ ├── temperatures_34000.txt │ ├── temperatures_35000.txt │ ├── temperatures_36000.txt │ ├── temperatures_37000.txt │ ├── temperatures_38000.txt │ ├── temperatures_39000.txt │ ├── temperatures_4000.txt │ ├── temperatures_40000.txt │ ├── temperatures_41000.txt │ ├── temperatures_42000.txt │ ├── temperatures_43000.txt │ ├── temperatures_44000.txt │ ├── temperatures_45000.txt │ ├── temperatures_46000.txt │ ├── temperatures_47000.txt │ ├── temperatures_48000.txt │ ├── temperatures_49000.txt │ ├── temperatures_5000.txt │ ├── temperatures_50000.txt │ ├── temperatures_51000.txt │ ├── temperatures_52000.txt │ ├── temperatures_53000.txt │ ├── temperatures_54000.txt │ ├── temperatures_55000.txt │ ├── temperatures_56000.txt │ ├── temperatures_57000.txt │ ├── temperatures_58000.txt │ ├── temperatures_59000.txt │ ├── temperatures_6000.txt │ ├── temperatures_60000.txt │ ├── temperatures_61000.txt │ ├── temperatures_62000.txt │ ├── temperatures_63000.txt │ ├── temperatures_64000.txt │ ├── temperatures_65000.txt │ ├── temperatures_66000.txt │ ├── temperatures_67000.txt │ ├── temperatures_68000.txt │ ├── temperatures_69000.txt │ ├── temperatures_7000.txt │ ├── temperatures_70000.txt │ ├── temperatures_71000.txt │ ├── temperatures_72000.txt │ ├── temperatures_73000.txt │ ├── temperatures_74000.txt │ ├── temperatures_75000.txt │ ├── temperatures_76000.txt │ ├── temperatures_77000.txt │ ├── temperatures_78000.txt │ ├── temperatures_79000.txt │ ├── temperatures_8000.txt │ ├── temperatures_80000.txt │ ├── temperatures_81000.txt │ ├── temperatures_82000.txt │ ├── temperatures_83000.txt │ ├── temperatures_84000.txt │ ├── temperatures_85000.txt │ ├── temperatures_86000.txt │ ├── temperatures_87000.txt │ ├── temperatures_88000.txt │ ├── temperatures_89000.txt │ ├── temperatures_9000.txt │ ├── temperatures_90000.txt │ ├── temperatures_91000.txt │ ├── temperatures_92000.txt │ ├── temperatures_93000.txt │ ├── temperatures_94000.txt │ ├── temperatures_95000.txt │ ├── temperatures_96000.txt │ ├── temperatures_97000.txt │ ├── temperatures_98000.txt │ ├── temperatures_99000.txt │ ├── temperatures_cuda.txt │ ├── thermal.m │ ├── thermal.mp4 │ ├── vals2colormap.m │ └── xyzs.txt ├── dynamics ├── cpu_dynamic ├── deposition_sim.cpp ├── gpu_dynamic ├── kernel.cu ├── makefile-euler ├── makefile-pc ├── radius.txt ├── stopwatch.hpp ├── xyzs.txt └── xyzs0.txt ├── infoFinalProject.txt ├── infoRescaleTablet-YaqiZhang.txt ├── report_and_presentation ├── presentation.pdf └── report.pdf ├── scaling_analysis ├── dynamic_cpugpu.png ├── dynamic_times_cpu.txt ├── dynamic_times_gpu.txt ├── scale_analysis.py ├── thermal_cpugpu.png ├── thermal_times_cpu.txt └── thermal_times_gpu.txt └── thermal ├── README ├── backfiles ├── cuda_thermal.cu ├── cuda_thermal.cuh ├── dynamics.cpp ├── dynamics.hpp ├── radius.txt └── xyzs.txt ├── constants.hpp ├── cpu_thermal ├── cpu_thermal.cpp ├── cuda_thermal.cuh ├── gpu_thermal ├── gpu_thermal.cu ├── infiles ├── radius.txt └── xyzs.txt ├── makefile-euler ├── makefile-pc ├── outfiles ├── radius_after.txt ├── temperatures.txt ├── temperatures_0.txt ├── temperatures_1000.txt ├── temperatures_10000.txt ├── temperatures_11000.txt ├── temperatures_12000.txt ├── temperatures_13000.txt ├── temperatures_14000.txt ├── temperatures_15000.txt ├── temperatures_16000.txt ├── temperatures_17000.txt ├── temperatures_18000.txt ├── temperatures_19000.txt ├── temperatures_2000.txt ├── temperatures_20000.txt ├── temperatures_21000.txt ├── temperatures_22000.txt ├── temperatures_23000.txt ├── temperatures_24000.txt ├── temperatures_25000.txt ├── temperatures_26000.txt ├── temperatures_27000.txt ├── temperatures_28000.txt ├── temperatures_29000.txt ├── temperatures_3000.txt ├── temperatures_30000.txt ├── temperatures_31000.txt ├── temperatures_32000.txt ├── temperatures_33000.txt ├── temperatures_34000.txt ├── temperatures_35000.txt ├── temperatures_36000.txt ├── temperatures_37000.txt ├── temperatures_38000.txt ├── temperatures_39000.txt ├── temperatures_4000.txt ├── temperatures_40000.txt ├── temperatures_41000.txt ├── temperatures_42000.txt ├── temperatures_43000.txt ├── temperatures_44000.txt ├── temperatures_45000.txt ├── temperatures_46000.txt ├── temperatures_47000.txt ├── temperatures_48000.txt ├── temperatures_49000.txt ├── temperatures_5000.txt ├── temperatures_50000.txt ├── temperatures_51000.txt ├── temperatures_52000.txt ├── temperatures_53000.txt ├── temperatures_54000.txt ├── temperatures_55000.txt ├── temperatures_56000.txt ├── temperatures_57000.txt ├── temperatures_58000.txt ├── temperatures_59000.txt ├── temperatures_6000.txt ├── temperatures_60000.txt ├── temperatures_61000.txt ├── temperatures_62000.txt ├── temperatures_63000.txt ├── temperatures_64000.txt ├── temperatures_65000.txt ├── temperatures_66000.txt ├── temperatures_67000.txt ├── temperatures_68000.txt ├── temperatures_69000.txt ├── temperatures_7000.txt ├── temperatures_70000.txt ├── temperatures_71000.txt ├── temperatures_72000.txt ├── temperatures_73000.txt ├── temperatures_74000.txt ├── temperatures_75000.txt ├── temperatures_76000.txt ├── temperatures_77000.txt ├── temperatures_78000.txt ├── temperatures_79000.txt ├── temperatures_8000.txt ├── temperatures_80000.txt ├── temperatures_81000.txt ├── temperatures_82000.txt ├── temperatures_83000.txt ├── temperatures_84000.txt ├── temperatures_85000.txt ├── temperatures_86000.txt ├── temperatures_87000.txt ├── temperatures_88000.txt ├── temperatures_89000.txt ├── temperatures_9000.txt ├── temperatures_90000.txt ├── temperatures_91000.txt ├── temperatures_92000.txt ├── temperatures_93000.txt ├── temperatures_94000.txt ├── temperatures_95000.txt ├── temperatures_96000.txt ├── temperatures_97000.txt ├── temperatures_98000.txt ├── temperatures_99000.txt ├── temperatures_cuda.txt └── xyzs_after.txt ├── particle.cpp ├── particle.hpp ├── thermal.cpp ├── thermal.hpp ├── thermal.sh ├── utility.cpp 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