├── Fig-1.jpg ├── Figure-1.jpg ├── FigureS1-2.jpg ├── MergeBlocks.sh ├── Phylogenomic_Profiling.r ├── README.md ├── SynNet.sh ├── SynetAdding-Diamond.sh ├── SynetAdding.sh ├── SynetBuild-X.sh ├── SynetBuilding-Diamond.sh ├── infomap.r ├── phypro.png └── sample-profiled_size_1_19751_clusters_binary_transposed /Fig-1.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/zhaotao1987/SynNet-Pipeline/HEAD/Fig-1.jpg -------------------------------------------------------------------------------- /Figure-1.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/zhaotao1987/SynNet-Pipeline/HEAD/Figure-1.jpg -------------------------------------------------------------------------------- /FigureS1-2.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/zhaotao1987/SynNet-Pipeline/HEAD/FigureS1-2.jpg -------------------------------------------------------------------------------- /MergeBlocks.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/zhaotao1987/SynNet-Pipeline/HEAD/MergeBlocks.sh -------------------------------------------------------------------------------- /Phylogenomic_Profiling.r: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/zhaotao1987/SynNet-Pipeline/HEAD/Phylogenomic_Profiling.r -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/zhaotao1987/SynNet-Pipeline/HEAD/README.md -------------------------------------------------------------------------------- /SynNet.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/zhaotao1987/SynNet-Pipeline/HEAD/SynNet.sh -------------------------------------------------------------------------------- /SynetAdding-Diamond.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/zhaotao1987/SynNet-Pipeline/HEAD/SynetAdding-Diamond.sh -------------------------------------------------------------------------------- /SynetAdding.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/zhaotao1987/SynNet-Pipeline/HEAD/SynetAdding.sh -------------------------------------------------------------------------------- /SynetBuild-X.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/zhaotao1987/SynNet-Pipeline/HEAD/SynetBuild-X.sh -------------------------------------------------------------------------------- /SynetBuilding-Diamond.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/zhaotao1987/SynNet-Pipeline/HEAD/SynetBuilding-Diamond.sh -------------------------------------------------------------------------------- /infomap.r: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/zhaotao1987/SynNet-Pipeline/HEAD/infomap.r -------------------------------------------------------------------------------- /phypro.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/zhaotao1987/SynNet-Pipeline/HEAD/phypro.png -------------------------------------------------------------------------------- /sample-profiled_size_1_19751_clusters_binary_transposed: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/zhaotao1987/SynNet-Pipeline/HEAD/sample-profiled_size_1_19751_clusters_binary_transposed --------------------------------------------------------------------------------