├── .DS_Store ├── README.md ├── data ├── allc185140_original_tot.rdata ├── cell_annotate.csv ├── col6.txt ├── ensembl100_hs_xt_dr_mm_orth.txt ├── figs6 │ ├── st1 │ │ ├── 1a.csv │ │ ├── 1d.csv │ │ ├── 1i.csv │ │ ├── 1j.csv │ │ ├── 1p.csv │ │ └── 1z.csv │ ├── st2 │ │ ├── 2a.csv │ │ ├── 2d.csv │ │ ├── 2e.csv │ │ ├── 2f.csv │ │ ├── 2h.csv │ │ ├── 2i.csv │ │ ├── 2j.csv │ │ ├── 2p.csv │ │ ├── 2q.csv │ │ └── 2z.csv │ └── st3 │ │ ├── 3a.csv │ │ ├── 3b.csv │ │ ├── 3c.csv │ │ ├── 3d.csv │ │ ├── 3e.csv │ │ ├── 3f.csv │ │ ├── 3h.csv │ │ ├── 3i.csv │ │ ├── 3j.csv │ │ ├── 3l.csv │ │ ├── 3m1.csv │ │ ├── 3m2.csv │ │ ├── 3n1.csv │ │ ├── 3n2.csv │ │ ├── 3o1.csv │ │ ├── 3o2.csv │ │ ├── 3o3.csv │ │ ├── 3pq.csv │ │ └── 3z.csv ├── ge2an.rdata └── tf288.txt ├── list ├── batch.txt ├── hb_gene.txt └── total_cc.txt ├── plot ├── h0_method1_hvg.pdf ├── h0_method2_hvg.pdf ├── hbg_umi.pdf └── hbg_umi_h0710.pdf ├── remap_Tan_frog ├── all_sam_name.txt ├── count.sh ├── download.sh ├── main.sh ├── map.sh ├── map2.sh ├── sam_info.txt ├── sam_name.txt └── sam_name2.txt └── src ├── ficlu.Rmd ├── fig1_clustering.r ├── fig4.r ├── fig6A.Rmd ├── fig6B.Rmd ├── fig6CDE.Rmd ├── figs13b.Rmd ├── function.r ├── functions.r ├── limb.Rmd ├── lin28.r ├── lin28_fig5ad.r ├── lin28_fig5e.r ├── lin28_figs14a.r ├── lin28_figs14cd.Rmd ├── lin28_figs14cd.r ├── lin28_function.r ├── lncrna_st.Rmd ├── rctd_c313.Rmd ├── scatter_fill2.r └── temporal.Rmd /.DS_Store: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/zhirongbaolab/heoa/HEAD/.DS_Store -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/zhirongbaolab/heoa/HEAD/README.md -------------------------------------------------------------------------------- /data/allc185140_original_tot.rdata: 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