├── .gitignore ├── CHANGELOG ├── INSTALL.rst ├── LICENSE ├── README.rst ├── bin └── ribotish ├── scripts ├── tisdiff_DESeq2.r └── tisdiff_edgeR.r ├── setup.py └── src ├── __init__.py ├── run ├── __init__.py ├── predict.py ├── quality.py ├── tisdiff.py └── transplot.py └── zbio ├── __init__.py ├── bam.py ├── bed.py ├── exp.py ├── fa.py ├── gtf.py ├── interval.py ├── io.py ├── orf.py ├── plot.py ├── ribo.py ├── stat.py └── tools.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/zhpn1024/ribotish/HEAD/.gitignore -------------------------------------------------------------------------------- /CHANGELOG: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/zhpn1024/ribotish/HEAD/CHANGELOG -------------------------------------------------------------------------------- /INSTALL.rst: 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