├── .gitignore ├── .travis.yml ├── LICENSE.txt ├── README.md ├── brats ├── __init__.py ├── evaluate.py ├── predict.py ├── preprocess.py ├── train.py └── train_isensee2017.py ├── doc ├── 3dUNet.png ├── brats_64cubedpatch_loss_graph.png ├── brats_64cubedpatch_validation_scores_boxplot.png ├── isensee2017.png ├── isensee_2017_loss_graph.png ├── isensee_2017_scores_boxplot.png └── tumor_segmentation_illusatration.gif ├── requirements.txt ├── test ├── test_generator.py ├── test_metrics.py ├── test_model.py ├── test_predict.py ├── test_training.py └── test_utils.py └── unet3d ├── __init__.py ├── augment.py ├── data.py ├── generator.py ├── metrics.py ├── model ├── __init__.py ├── isensee2017.py └── unet.py ├── normalize.py ├── prediction.py ├── training.py └── utils ├── __init__.py ├── nilearn_custom_utils ├── LICENSE ├── __init__.py └── nilearn_utils.py ├── patches.py ├── sitk_utils.py └── utils.py /.gitignore: -------------------------------------------------------------------------------- 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