├── .DS_Store ├── .gitattributes ├── Analysis ├── nb1.dataset_prepare.ipynb ├── nb2.benchmarking.ipynb ├── nb3.data_analysis.ipynb └── nb4.pics_plots.ipynb ├── End_to_end_Tok_CLS ├── eval_Tokens.py ├── pred_Token.py └── train_Tokens.py ├── End_to_end_tok_CLS_LoRA ├── eval_Tokens.CE_LoRA.py ├── focal_loss.py ├── pred_Token.LoRA.py └── train_Tokens_LoRA.py ├── Figure_1.png ├── LICENSE ├── README.md ├── Seq_Tok_CLS_2_steps ├── eval_2steps.py ├── pred_Token.2_steps.py ├── train_Tokens.py └── train_sequence.py ├── evaluation.tar.gz ├── predictions.tar.gz ├── run_pred_AMP_SEMiner.ipynb └── scripts ├── env_install.sh ├── pdb2structuredes.AMP_frag.py └── runSeqProperties.py /.DS_Store: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/zjlab-BioGene/AMP-SEMiner/HEAD/.DS_Store -------------------------------------------------------------------------------- /.gitattributes: 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