├── DeepCIP.py ├── README.md ├── compiles ├── GCN.so ├── S_LSTM.so ├── __init__.py ├── create_graph_data.so ├── create_graph_data_fusion.so ├── create_graph_predict.so ├── cross_validate_test.so ├── dataset.so ├── fusion_gnn.so ├── gnn_process_data.so ├── slstm_process_data.so └── utils.py ├── data └── circires_case.fa ├── environment.yml ├── model ├── Fusion │ ├── set1 │ │ └── version_0 │ │ │ └── checkpoints │ │ │ └── epoch=49-step=1400.ckpt │ ├── set2 │ │ └── version_1 │ │ │ └── checkpoints │ │ │ └── epoch=112-step=3164.ckpt │ └── set3 │ │ └── version_3 │ │ └── checkpoints │ │ └── epoch=37-step=1064.ckpt ├── GCN │ ├── set1 │ │ └── version_1 │ │ │ └── checkpoints │ │ │ └── epoch=176-step=4956.ckpt │ ├── set2 │ │ └── version_1 │ │ │ └── checkpoints │ │ │ └── epoch=5-step=168.ckpt │ └── set3 │ │ └── version_1 │ │ └── checkpoints │ │ └── epoch=1-step=56.ckpt └── S_LSTM │ ├── set1 │ └── version_0 │ │ └── checkpoints │ │ └── epoch=40-step=1148.ckpt │ ├── set2 │ └── version_0 │ │ └── checkpoints │ │ └── epoch=18-step=532.ckpt │ └── set3 │ └── version_0 │ └── checkpoints │ └── epoch=19-step=560.ckpt ├── process_data ├── label │ ├── test_label.npy │ ├── train_set1_label.npy │ ├── train_set2_label.npy │ └── train_set3_label.npy └── seq │ ├── set1_data.fa │ ├── set1_data.txt │ ├── set2_data.fa │ ├── set2_data.txt │ ├── set3_data.fa │ ├── set3_data.txt │ ├── test_data.fa │ └── test_data.txt └── utils ├── rna_onehot.npy └── rna_vocab_dict1.npy /DeepCIP.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/zjupgx/DeepCIP/HEAD/DeepCIP.py -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/zjupgx/DeepCIP/HEAD/README.md -------------------------------------------------------------------------------- /compiles/GCN.so: 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