├── .gitattributes ├── .github ├── dependabot.yml └── workflows │ ├── badge.yaml │ ├── dependabot-autoapprove.yml │ ├── dependabot-review.yml │ ├── formatting.yaml │ ├── publish_pypi.yaml │ └── tests.yaml ├── .gitignore ├── .pre-commit-config.yaml ├── .readthedocs.yaml ├── LICENSE ├── README.rst ├── codecov.yaml ├── data ├── kidneyimmune.h5ad ├── out │ ├── deconvoluted.txt │ ├── means.txt │ ├── pvalues.txt │ └── significant_means.txt ├── out_split │ ├── deconvoluted.txt │ ├── means.txt │ ├── pvalues.txt │ └── significant_means.txt ├── out_v5 │ ├── degs_analysis_CellSign_active_interactions_07_27_2023_151846.txt │ ├── degs_analysis_CellSign_active_interactions_deconvoluted_07_27_2023_151846.txt │ ├── degs_analysis_deconvoluted_07_27_2023_151846.txt │ ├── degs_analysis_deconvoluted_percents_07_27_2023_151846.txt │ ├── degs_analysis_interaction_scores_07_27_2023_151846.txt │ ├── degs_analysis_means_07_27_2023_151846.txt │ ├── degs_analysis_relevant_interactions_07_27_2023_151846.txt │ └── 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