├── .gitignore ├── LICENSE ├── README.md ├── images └── virtual_lab_architecture.png ├── nanobody_design ├── README.md ├── ablations.ipynb ├── designed │ ├── combined │ │ ├── H11-D4.csv │ │ ├── Nb21.csv │ │ ├── Ty1.csv │ │ └── VHH-72.csv │ └── scores │ │ ├── round_0_scores │ │ ├── H11-D4.csv │ │ ├── H11-D4_all.csv │ │ ├── Nb21.csv │ │ ├── Nb21_all.csv │ │ ├── Ty1.csv │ │ ├── Ty1_all.csv │ │ ├── VHH-72.csv │ │ └── VHH-72_all.csv │ │ ├── round_1_scores │ │ ├── H11-D4.csv │ │ ├── H11-D4_all.csv │ │ ├── Nb21.csv │ │ ├── Nb21_all.csv │ │ ├── Ty1.csv │ │ ├── Ty1_all.csv │ │ ├── VHH-72.csv │ │ └── VHH-72_all.csv │ │ ├── round_2_scores │ │ ├── H11-D4.csv │ │ ├── H11-D4_all.csv │ │ ├── Nb21.csv │ │ ├── Nb21_all.csv │ │ ├── Ty1.csv │ │ ├── Ty1_all.csv │ │ ├── VHH-72.csv │ │ └── VHH-72_all.csv │ │ ├── round_3_scores │ │ ├── H11-D4.csv │ │ ├── H11-D4_all.csv │ │ ├── Nb21.csv │ │ ├── Nb21_all.csv │ │ ├── Ty1.csv │ │ ├── Ty1_all.csv │ │ ├── VHH-72.csv │ │ └── VHH-72_all.csv │ │ └── round_4_scores │ │ ├── H11-D4.csv │ │ ├── H11-D4_all.csv │ │ ├── Nb21.csv │ │ ├── Nb21_all.csv │ │ ├── Ty1.csv │ │ ├── Ty1_all.csv │ │ ├── VHH-72.csv │ │ └── VHH-72_all.csv ├── discussions │ ├── ablations │ │ ├── coding_eval.csv │ │ ├── coding_eval.pdf │ │ ├── knowledge_immunologist.json │ │ ├── knowledge_immunologist.md │ │ ├── knowledge_immunologist_ft.json │ │ ├── knowledge_immunologist_ft.md │ │ └── project_specification │ │ │ ├── design_choices.csv │ │ │ ├── design_counts.pdf │ │ │ ├── generic_team │ │ │ ├── discussion_1.json │ │ │ ├── discussion_1.md │ │ │ ├── discussion_10.json │ │ │ ├── discussion_10.md │ │ │ ├── discussion_11.json │ │ │ ├── discussion_11.md │ │ │ ├── discussion_12.json │ │ │ ├── discussion_12.md │ │ │ ├── discussion_13.json │ │ │ ├── discussion_13.md │ │ │ ├── discussion_14.json │ │ │ ├── discussion_14.md │ │ │ ├── discussion_15.json │ │ │ ├── discussion_15.md │ │ │ ├── discussion_16.json │ │ │ ├── discussion_16.md │ │ │ ├── discussion_17.json │ │ │ ├── discussion_17.md │ │ │ ├── discussion_18.json │ │ │ ├── discussion_18.md │ │ │ ├── discussion_19.json │ │ │ ├── discussion_19.md │ │ │ ├── discussion_2.json │ │ │ ├── discussion_2.md │ │ │ ├── discussion_20.json │ │ │ ├── discussion_20.md │ │ │ ├── discussion_21.json │ │ │ ├── discussion_21.md │ │ │ ├── discussion_22.json │ │ │ ├── discussion_22.md │ │ │ ├── discussion_23.json │ │ │ ├── discussion_23.md │ │ │ ├── discussion_24.json │ │ │ ├── discussion_24.md │ │ │ ├── discussion_25.json │ │ │ ├── discussion_25.md │ │ │ ├── discussion_26.json │ │ │ ├── discussion_26.md │ │ │ ├── discussion_27.json │ │ │ ├── discussion_27.md │ │ │ ├── discussion_28.json │ │ │ ├── discussion_28.md │ │ │ ├── discussion_29.json │ │ │ ├── discussion_29.md │ │ │ ├── discussion_3.json │ │ │ ├── discussion_3.md │ │ │ ├── discussion_30.json │ │ │ ├── discussion_30.md │ │ │ ├── discussion_31.json │ │ │ ├── discussion_31.md │ │ │ ├── discussion_32.json │ │ │ ├── discussion_32.md │ │ │ ├── discussion_33.json │ │ │ ├── discussion_33.md │ │ │ ├── discussion_34.json │ │ │ ├── discussion_34.md │ │ │ ├── discussion_35.json │ │ │ ├── discussion_35.md │ │ │ ├── discussion_36.json │ │ │ ├── discussion_36.md │ │ │ ├── discussion_37.json │ │ │ ├── discussion_37.md │ │ │ ├── discussion_38.json │ │ │ ├── discussion_38.md │ │ │ ├── discussion_39.json │ │ │ ├── discussion_39.md │ │ │ ├── discussion_4.json │ │ │ ├── discussion_4.md │ │ │ ├── discussion_40.json │ │ │ ├── discussion_40.md │ │ │ ├── discussion_41.json │ │ │ ├── discussion_41.md │ │ │ ├── discussion_42.json │ │ │ ├── discussion_42.md │ │ │ ├── discussion_43.json │ │ │ ├── discussion_43.md │ │ │ ├── discussion_44.json │ │ │ ├── discussion_44.md │ │ │ ├── discussion_45.json │ │ │ ├── discussion_45.md │ │ │ ├── discussion_46.json │ │ │ ├── discussion_46.md │ │ │ ├── discussion_47.json │ │ │ ├── discussion_47.md │ │ │ ├── discussion_48.json │ │ │ ├── discussion_48.md │ │ │ ├── discussion_49.json │ │ │ ├── discussion_49.md │ │ │ ├── discussion_5.json │ │ │ ├── discussion_5.md │ │ │ ├── discussion_50.json │ │ │ ├── discussion_50.md │ │ │ ├── discussion_6.json │ │ │ ├── discussion_6.md │ │ │ ├── discussion_7.json │ │ │ ├── discussion_7.md │ │ │ ├── discussion_8.json │ │ │ ├── discussion_8.md │ │ │ ├── discussion_9.json │ │ │ ├── discussion_9.md │ │ │ ├── merged.json │ │ │ └── merged.md │ │ │ ├── protein_counts.pdf │ │ │ └── scientist_team │ │ │ ├── discussion_1.json │ │ │ ├── discussion_1.md │ │ │ ├── discussion_10.json │ │ │ ├── discussion_10.md │ │ │ ├── discussion_11.json │ │ │ ├── discussion_11.md │ │ │ ├── discussion_12.json │ │ │ ├── discussion_12.md │ │ │ ├── discussion_13.json │ │ │ ├── discussion_13.md │ │ │ ├── discussion_14.json │ │ │ ├── discussion_14.md │ │ │ ├── discussion_15.json │ │ │ ├── discussion_15.md │ │ │ ├── discussion_16.json │ │ │ ├── discussion_16.md │ │ │ ├── discussion_17.json │ │ │ ├── discussion_17.md │ │ │ ├── discussion_18.json │ │ │ ├── discussion_18.md │ │ │ ├── discussion_19.json │ │ │ ├── discussion_19.md │ │ │ ├── discussion_2.json │ │ │ ├── discussion_2.md │ │ │ ├── discussion_20.json │ │ │ ├── discussion_20.md │ │ │ ├── discussion_21.json │ │ │ ├── discussion_21.md │ │ │ ├── discussion_22.json │ │ │ ├── discussion_22.md │ │ │ ├── discussion_23.json │ │ │ ├── discussion_23.md │ │ │ ├── discussion_24.json │ │ │ ├── discussion_24.md │ │ │ ├── discussion_25.json │ │ │ ├── discussion_25.md │ │ │ ├── discussion_26.json │ │ │ ├── discussion_26.md │ │ │ ├── discussion_27.json │ │ │ ├── discussion_27.md │ │ │ ├── discussion_28.json │ │ │ ├── discussion_28.md │ │ │ ├── discussion_29.json │ │ │ ├── discussion_29.md │ │ │ ├── discussion_3.json │ │ │ ├── discussion_3.md │ │ │ ├── discussion_30.json │ │ │ ├── discussion_30.md │ │ │ ├── discussion_31.json │ │ │ ├── discussion_31.md │ │ │ ├── discussion_32.json │ │ │ ├── discussion_32.md │ │ │ ├── discussion_33.json │ │ │ ├── discussion_33.md │ │ │ ├── discussion_34.json │ │ │ ├── discussion_34.md │ │ │ ├── discussion_35.json │ │ │ ├── discussion_35.md │ │ │ ├── discussion_36.json │ │ │ ├── discussion_36.md │ │ │ ├── discussion_37.json │ │ │ ├── discussion_37.md │ │ │ ├── discussion_38.json │ │ │ ├── discussion_38.md │ │ │ ├── discussion_39.json │ │ │ ├── discussion_39.md │ │ │ ├── discussion_4.json │ │ │ ├── discussion_4.md │ │ │ ├── discussion_40.json │ │ │ ├── discussion_40.md │ │ │ ├── discussion_41.json │ │ │ ├── discussion_41.md │ │ │ ├── discussion_42.json │ │ │ ├── discussion_42.md │ │ │ ├── discussion_43.json │ │ │ ├── discussion_43.md │ │ │ ├── discussion_44.json │ │ │ ├── discussion_44.md │ │ │ ├── discussion_45.json │ │ │ ├── discussion_45.md │ │ │ ├── discussion_46.json │ │ │ ├── discussion_46.md │ │ │ ├── discussion_47.json │ │ │ ├── discussion_47.md │ │ │ ├── discussion_48.json │ │ │ ├── discussion_48.md │ │ │ ├── discussion_49.json │ │ │ ├── discussion_49.md │ │ │ ├── discussion_5.json │ │ │ ├── discussion_5.md │ │ │ ├── discussion_50.json │ │ │ ├── discussion_50.md │ │ │ ├── discussion_6.json │ │ │ ├── discussion_6.md │ │ │ ├── discussion_7.json │ │ │ ├── discussion_7.md │ │ │ ├── discussion_8.json │ │ │ ├── discussion_8.md │ │ │ ├── discussion_9.json │ │ │ ├── discussion_9.md │ │ │ ├── merged.json │ │ │ └── merged.md │ ├── alphafold │ │ ├── discussion_1.json │ │ ├── discussion_1.md │ │ ├── discussion_2.json │ │ ├── discussion_2.md │ │ ├── discussion_3.json │ │ ├── discussion_3.md │ │ ├── discussion_4.json │ │ ├── discussion_4.md │ │ ├── discussion_5.json │ │ ├── discussion_5.md │ │ ├── improved.json │ │ ├── improved.md │ │ ├── merged.json │ │ └── merged.md │ ├── esm │ │ ├── discussion_1.json │ │ ├── discussion_1.md │ │ ├── discussion_2.json │ │ ├── discussion_2.md │ │ ├── discussion_3.json │ │ ├── discussion_3.md │ │ ├── discussion_4.json │ │ ├── discussion_4.md │ │ ├── discussion_5.json │ │ ├── discussion_5.md │ │ ├── improved.json │ │ ├── improved.md │ │ ├── merged.json │ │ └── merged.md │ ├── finetuning │ │ ├── AlphaFold-Multimer_papers_1.json │ │ ├── AlphaFold-Multimer_papers_1.md │ │ ├── AlphaFold-Multimer_papers_2.json │ │ ├── AlphaFold-Multimer_papers_2.md │ │ ├── AlphaFold-Multimer_papers_3.json │ │ ├── AlphaFold-Multimer_papers_3.md │ │ ├── AlphaFold-Multimer_papers_4.json │ │ ├── AlphaFold-Multimer_papers_4.md │ │ ├── AlphaFold-Multimer_papers_5.json │ │ ├── AlphaFold-Multimer_papers_5.md │ │ ├── AlphaFold-Multimer_queries.json │ │ ├── AlphaFold-Multimer_queries.md │ │ ├── AlphaFold-Multimer_title_to_pmcid.json │ │ ├── AlphaFold-Multimer_training_data.jsonl │ │ ├── Computational_Biologist_training_data.jsonl │ │ ├── ESM_papers_1.json │ │ ├── ESM_papers_1.md │ │ ├── ESM_papers_2.json │ │ ├── ESM_papers_2.md │ │ ├── ESM_papers_3.json │ │ ├── ESM_papers_3.md │ │ ├── ESM_papers_4.json │ │ ├── ESM_papers_4.md │ │ ├── ESM_papers_5.json │ │ ├── ESM_papers_5.md │ │ ├── ESM_queries.json │ │ ├── ESM_queries.md │ │ ├── ESM_title_to_pmcid.json │ │ ├── ESM_training_data.jsonl │ │ ├── Immunologist_training_data.jsonl │ │ ├── Machine_Learning_Specialist_training_data.jsonl │ │ ├── Rosetta_papers_1.json │ │ ├── Rosetta_papers_1.md │ │ ├── Rosetta_papers_2.json │ │ ├── Rosetta_papers_2.md │ │ ├── Rosetta_papers_3.json │ │ ├── Rosetta_papers_3.md │ │ ├── Rosetta_papers_4.json │ │ ├── Rosetta_papers_4.md │ │ ├── Rosetta_papers_5.json │ │ ├── Rosetta_papers_5.md │ │ ├── Rosetta_queries.json │ │ ├── Rosetta_queries.md │ │ ├── Rosetta_title_to_pmcid.json │ │ ├── Rosetta_training_data.jsonl │ │ ├── SARS-CoV-2_spike_protein_papers_1.json │ │ ├── SARS-CoV-2_spike_protein_papers_1.md │ │ ├── SARS-CoV-2_spike_protein_papers_2.json │ │ ├── SARS-CoV-2_spike_protein_papers_2.md │ │ ├── SARS-CoV-2_spike_protein_papers_3.json │ │ ├── SARS-CoV-2_spike_protein_papers_3.md │ │ ├── SARS-CoV-2_spike_protein_papers_4.json │ │ ├── SARS-CoV-2_spike_protein_papers_4.md │ │ ├── SARS-CoV-2_spike_protein_papers_5.json │ │ ├── SARS-CoV-2_spike_protein_papers_5.md │ │ ├── SARS-CoV-2_spike_protein_queries.json │ │ ├── SARS-CoV-2_spike_protein_queries.md │ │ ├── SARS-CoV-2_spike_protein_title_to_pmcid.json │ │ ├── SARS-CoV-2_spike_protein_training_data.jsonl │ │ ├── SARS-CoV-2_variants_KP.3_and_JN.1_papers_1.json │ │ ├── SARS-CoV-2_variants_KP.3_and_JN.1_papers_1.md │ │ ├── SARS-CoV-2_variants_KP.3_and_JN.1_papers_2.json │ │ ├── SARS-CoV-2_variants_KP.3_and_JN.1_papers_2.md │ │ ├── SARS-CoV-2_variants_KP.3_and_JN.1_papers_3.json │ │ ├── SARS-CoV-2_variants_KP.3_and_JN.1_papers_3.md │ │ ├── SARS-CoV-2_variants_KP.3_and_JN.1_papers_4.json │ │ ├── SARS-CoV-2_variants_KP.3_and_JN.1_papers_4.md │ │ ├── SARS-CoV-2_variants_KP.3_and_JN.1_papers_5.json │ │ ├── SARS-CoV-2_variants_KP.3_and_JN.1_papers_5.md │ │ ├── SARS-CoV-2_variants_KP.3_and_JN.1_queries.json │ │ ├── SARS-CoV-2_variants_KP.3_and_JN.1_queries.md │ │ ├── SARS-CoV-2_variants_KP.3_and_JN.1_title_to_pmcid.json │ │ ├── SARS-CoV-2_variants_KP.3_and_JN.1_training_data.jsonl │ │ ├── agent_title_to_id.json │ │ ├── all_generic_to_id.json │ │ ├── all_generic_training_data.jsonl │ │ ├── nanobodies_papers_1.json │ │ ├── nanobodies_papers_1.md │ │ ├── nanobodies_papers_2.json │ │ ├── nanobodies_papers_2.md │ │ ├── nanobodies_papers_3.json │ │ ├── nanobodies_papers_3.md │ │ ├── nanobodies_papers_4.json │ │ ├── nanobodies_papers_4.md │ │ ├── nanobodies_papers_5.json │ │ ├── nanobodies_papers_5.md │ │ ├── nanobodies_queries.json │ │ ├── nanobodies_queries.md │ │ ├── nanobodies_title_to_pmcid.json │ │ ├── nanobodies_training_data.jsonl │ │ ├── qa_pairs │ │ │ ├── AlphaFold-Multimer │ │ │ │ ├── 10011802.json │ │ │ │ ├── 10090944.json │ │ │ │ ├── 10113261.json │ │ │ │ ├── 10129313.json │ │ │ │ ├── 10136805.json │ │ │ │ ├── 10151615.json │ │ │ │ ├── 10165273.json │ │ │ │ ├── 10227038.json │ │ │ │ ├── 10246253.json │ │ │ │ ├── 10274727.json │ │ │ │ ├── 10281963.json │ │ │ │ ├── 10285254.json │ │ │ │ ├── 10312770.json │ │ │ │ ├── 10320053.json │ │ │ │ ├── 10348836.json │ │ │ │ ├── 10349958.json │ │ │ │ ├── 10356834.json │ │ │ │ ├── 10402144.json │ │ │ │ ├── 10484931.json │ │ │ │ ├── 10497406.json │ │ │ │ ├── 10497418.json │ │ │ │ ├── 10533508.json │ │ │ │ ├── 10534052.json │ │ │ │ ├── 10540290.json │ │ │ │ ├── 10554751.json │ │ │ │ ├── 10613300.json │ │ │ │ ├── 10638423.json │ │ │ │ ├── 10692239.json │ │ │ │ ├── 10707872.json │ │ │ │ ├── 10760632.json │ │ │ │ ├── 10808870.json │ │ │ │ ├── 10827046.json │ │ │ │ ├── 10844748.json │ │ │ │ ├── 10865538.json │ │ │ │ ├── 10879169.json │ │ │ │ ├── 10883280.json │ │ │ │ ├── 10883643.json │ │ │ │ ├── 10886287.json │ │ │ │ ├── 10887370.json │ │ │ │ ├── 10893003.json │ │ │ │ ├── 10933411.json │ │ │ │ ├── 10966450.json │ │ │ │ ├── 10987090.json │ │ │ │ ├── 10987651.json │ │ │ │ ├── 11009965.json │ │ │ │ ├── 11016909.json │ │ │ │ ├── 11030396.json │ │ │ │ ├── 11052572.json │ │ │ │ ├── 11065178.json │ │ │ │ ├── 11070728.json │ │ │ │ ├── 11112044.json │ │ │ │ ├── 11116810.json │ │ │ │ ├── 11117562.json │ │ │ │ ├── 11148199.json │ │ │ │ ├── 11157076.json │ │ │ │ ├── 11162299.json │ │ │ │ ├── 11168924.json │ │ │ │ ├── 11188072.json │ │ │ │ ├── 11218997.json │ │ │ │ ├── 11228504.json │ │ │ │ ├── 11230293.json │ │ │ │ ├── 11281715.json │ │ │ │ ├── 11294035.json │ │ │ │ ├── 11302914.json │ │ │ │ ├── 11319189.json │ │ │ │ ├── 11321591.json │ │ │ │ ├── 11383924.json │ │ │ │ ├── 11392808.json │ │ │ │ ├── 11405125.json │ │ │ │ ├── 11405395.json │ │ │ │ ├── 11461844.json │ │ │ │ ├── 11468914.json │ │ │ │ ├── 11474105.json │ │ │ │ ├── 11481066.json │ │ │ │ ├── 11483107.json │ │ │ │ ├── 11507785.json │ │ │ │ ├── 11513016.json │ │ │ │ ├── 11543627.json │ │ │ │ ├── 11564622.json │ │ │ │ ├── 11575592.json │ │ │ │ ├── 11578886.json │ │ │ │ ├── 11623436.json │ │ │ │ ├── 11659936.json │ │ │ │ ├── 11697402.json │ │ │ │ ├── 11702601.json │ │ │ │ ├── 11702703.json │ │ │ │ ├── 11754096.json │ │ │ │ ├── 11763140.json │ │ │ │ ├── 11775587.json │ │ │ │ ├── 11783119.json │ │ │ │ ├── 11788748.json │ │ │ │ ├── 11788754.json │ │ │ │ ├── 11788755.json │ │ │ │ ├── 11793827.json │ │ │ │ ├── 11799971.json │ │ │ │ ├── 11800653.json │ │ │ │ ├── 8874714.json │ │ │ │ ├── 9094657.json │ │ │ │ ├── 9234698.json │ │ │ │ ├── 9278006.json │ │ │ │ ├── 9406418.json │ │ │ │ ├── 9459051.json │ │ │ │ ├── 9570074.json │ │ │ │ ├── 9580857.json │ │ │ │ ├── 9674347.json │ │ │ │ ├── 9758053.json │ │ │ │ ├── 9772387.json │ │ │ │ ├── 9846249.json │ │ │ │ ├── 9850923.json │ │ │ │ ├── 9859041.json │ │ │ │ ├── 9907820.json │ │ │ │ ├── 9957715.json │ │ │ │ ├── 9973325.json │ │ │ │ └── 9992458.json │ │ │ ├── ESM │ │ │ │ ├── 10220908.json │ │ │ │ ├── 10370091.json │ │ │ │ ├── 10589401.json │ │ │ │ ├── 10698008.json │ │ │ │ ├── 10792694.json │ │ │ │ ├── 10831124.json │ │ │ │ ├── 10869273.json │ │ │ │ ├── 10886287.json │ │ │ │ ├── 10925456.json │ │ │ │ ├── 10942297.json │ │ │ │ ├── 10942313.json │ │ │ │ ├── 10978573.json │ │ │ │ ├── 11036486.json │ │ │ │ ├── 11057648.json │ │ │ │ ├── 11066466.json │ │ │ │ ├── 11128484.json │ │ │ │ ├── 11208048.json │ │ │ │ ├── 11221890.json │ │ │ │ ├── 11226077.json │ │ │ │ ├── 11254834.json │ │ │ │ ├── 11275918.json │ │ │ │ ├── 11326577.json │ │ │ │ ├── 11330463.json │ │ │ │ ├── 11466415.json │ │ │ │ ├── 11477718.json │ │ │ │ ├── 11507661.json │ │ │ │ ├── 11601519.json │ │ │ │ ├── 11614202.json │ │ │ │ ├── 11701548.json │ │ │ │ ├── 11725859.json │ │ │ │ ├── 11730357.json │ │ │ │ ├── 11745544.json │ │ │ │ ├── 11745815.json │ │ │ │ ├── 11747409.json │ │ │ │ ├── 11750110.json │ │ │ │ ├── 11751191.json │ │ │ │ ├── 11751364.json │ │ │ │ ├── 11753890.json │ │ │ │ ├── 11783280.json │ │ │ │ ├── 11783440.json │ │ │ │ ├── 11788748.json │ │ │ │ ├── 11794456.json │ │ │ │ ├── 11796103.json │ │ │ │ ├── 11796362.json │ │ │ │ ├── 9294429.json │ │ │ │ └── 9720949.json │ │ │ ├── Rosetta │ │ │ │ ├── 10069166.json │ │ │ │ ├── 10301038.json │ │ │ │ ├── 10361724.json │ │ │ │ ├── 10402144.json │ │ │ │ ├── 10462100.json │ │ │ │ ├── 10468394.json │ │ │ │ ├── 10509195.json │ │ │ │ ├── 10858482.json │ │ │ │ ├── 10965422.json │ │ │ │ ├── 10975102.json │ │ │ │ ├── 10983868.json │ │ │ │ ├── 11031966.json │ │ │ │ ├── 11036486.json │ │ │ │ ├── 11040732.json │ │ │ │ ├── 11055898.json │ │ │ │ ├── 7500280.json │ │ │ │ ├── 7603796.json │ │ │ │ ├── 7992133.json │ │ │ │ ├── 7993800.json │ │ │ │ ├── 7995276.json │ │ │ │ ├── 7999226.json │ │ │ │ ├── 8225355.json │ │ │ │ ├── 8225619.json │ │ │ │ ├── 8389498.json │ │ │ │ ├── 8590000.json │ │ │ │ ├── 8765073.json │ │ │ │ ├── 8967028.json │ │ │ │ ├── 9015148.json │ │ │ │ ├── 9628197.json │ │ │ │ ├── 9683856.json │ │ │ │ ├── 9934699.json │ │ │ │ └── 9936628.json │ │ │ ├── SARS-CoV-2_spike_protein │ │ │ │ ├── 10013841.json │ │ │ │ ├── 10028217.json │ │ │ │ ├── 10042144.json │ │ │ │ ├── 10051120.json │ │ │ │ ├── 10054972.json │ │ │ │ ├── 10060843.json │ │ │ │ ├── 10114651.json │ │ │ │ ├── 10148623.json │ │ │ │ ├── 10154539.json │ │ │ │ ├── 10170451.json │ │ │ │ ├── 10238279.json │ │ │ │ ├── 10251734.json │ │ │ │ ├── 10265947.json │ │ │ │ ├── 10268213.json │ │ │ │ ├── 10275483.json │ │ │ │ ├── 10294592.json │ │ │ │ ├── 10301551.json │ │ │ │ ├── 10302031.json │ │ │ │ ├── 10303109.json │ │ │ │ ├── 10330301.json │ │ │ │ ├── 10373554.json │ │ │ │ ├── 10384293.json │ │ │ │ ├── 10386765.json │ │ │ │ ├── 10444775.json │ │ │ │ ├── 10445546.json │ │ │ │ ├── 10507807.json │ │ │ │ ├── 10517151.json │ │ │ │ ├── 10518403.json │ │ │ │ ├── 10532743.json │ │ │ │ ├── 10536364.json │ │ │ │ ├── 10562541.json │ │ │ │ ├── 10588750.json │ │ │ │ ├── 10590698.json │ │ │ │ ├── 10615762.json │ │ │ │ ├── 10636138.json │ │ │ │ ├── 10663135.json │ │ │ │ ├── 10664894.json │ │ │ │ ├── 10683510.json │ │ │ │ ├── 10688893.json │ │ │ │ ├── 10695562.json │ │ │ │ ├── 10715488.json │ │ │ │ ├── 10757926.json │ │ │ │ ├── 10847457.json │ │ │ │ ├── 10858482.json │ │ │ │ ├── 10858559.json │ │ │ │ ├── 10865538.json │ │ │ │ ├── 10865805.json │ │ │ │ ├── 10878242.json │ │ │ │ ├── 10886287.json │ │ │ │ ├── 10892724.json │ │ │ │ ├── 10954308.json │ │ │ │ ├── 10968798.json │ │ │ │ ├── 10985062.json │ │ │ │ ├── 10986514.json │ │ │ │ ├── 10986611.json │ │ │ │ ├── 11054741.json │ │ │ │ ├── 11076045.json │ │ │ │ ├── 11099193.json │ │ │ │ ├── 11100608.json │ │ │ │ ├── 11133524.json │ │ │ │ ├── 11140640.json │ │ │ │ ├── 11140877.json │ │ │ │ ├── 11148044.json │ │ │ │ ├── 11200683.json │ │ │ │ ├── 11209230.json │ │ │ │ ├── 11211474.json │ │ │ │ ├── 11236199.json │ │ │ │ ├── 11254834.json │ │ │ │ ├── 11277385.json │ │ │ │ ├── 11285730.json │ │ │ │ ├── 11311977.json │ │ │ │ ├── 11324105.json │ │ │ │ ├── 11324185.json │ │ │ │ ├── 11389415.json │ │ │ │ ├── 11401216.json │ │ │ │ ├── 11481066.json │ │ │ │ ├── 11515141.json │ │ │ │ ├── 11528319.json │ │ │ │ ├── 11530565.json │ │ │ │ ├── 11551432.json │ │ │ │ ├── 11562025.json │ │ │ │ ├── 11609190.json │ │ │ │ ├── 11614295.json │ │ │ │ ├── 11630572.json │ │ │ │ ├── 11650500.json │ │ │ │ ├── 11666439.json │ │ │ │ ├── 11668528.json │ │ │ │ ├── 11679499.json │ │ │ │ ├── 11723632.json │ │ │ │ ├── 11768830.json │ │ │ │ ├── 11793827.json │ │ │ │ ├── 7430568.json │ │ │ │ ├── 7443330.json │ │ │ │ ├── 7473855.json │ │ │ │ ├── 7685322.json │ │ │ │ ├── 7820838.json │ │ │ │ ├── 7822889.json │ │ │ │ ├── 7833398.json │ │ │ │ ├── 7844813.json │ │ │ │ ├── 7857409.json │ │ │ │ ├── 7870875.json │ │ │ │ ├── 7891930.json │ │ │ │ ├── 7932109.json │ │ │ │ ├── 8043454.json │ │ │ │ ├── 8077567.json │ │ │ │ ├── 8097376.json │ │ │ │ ├── 8126837.json │ │ │ │ ├── 8181738.json │ │ │ │ ├── 8193598.json │ │ │ │ ├── 8194341.json │ │ │ │ ├── 8202428.json │ │ │ │ ├── 8223476.json │ │ │ │ ├── 8232969.json │ │ │ │ ├── 8248807.json │ │ │ │ ├── 8260353.json │ │ │ │ ├── 8354634.json │ │ │ │ ├── 8420576.json │ │ │ │ ├── 8448731.json │ │ │ │ ├── 8458290.json │ │ │ │ ├── 8463300.json │ │ │ │ ├── 8514607.json │ │ │ │ ├── 8515575.json │ │ │ │ ├── 8526496.json │ │ │ │ ├── 8537675.json │ │ │ │ ├── 8564274.json │ │ │ │ ├── 8575140.json │ │ │ │ ├── 8597880.json │ │ │ │ ├── 8608585.json │ │ │ │ ├── 8646660.json │ │ │ │ ├── 8651051.json │ │ │ │ ├── 8651292.json │ │ │ │ ├── 8677774.json │ │ │ │ ├── 8700021.json │ │ │ │ ├── 8724751.json │ │ │ │ ├── 8726723.json │ │ │ │ ├── 8730734.json │ │ │ │ ├── 8748511.json │ │ │ │ ├── 8771608.json │ │ │ │ ├── 8776496.json │ │ │ │ ├── 8782626.json │ │ │ │ ├── 8828845.json │ │ │ │ ├── 8837488.json │ │ │ │ ├── 8853550.json │ │ │ │ ├── 8863326.json │ │ │ │ ├── 8877688.json │ │ │ │ ├── 8890389.json │ │ │ │ ├── 8899823.json │ │ │ │ ├── 8908544.json │ │ │ │ ├── 8920968.json │ │ │ │ ├── 8928829.json │ │ │ │ ├── 8950575.json │ │ │ │ ├── 8951411.json │ │ │ │ ├── 8956255.json │ │ │ │ ├── 8967028.json │ │ │ │ ├── 8971115.json │ │ │ │ ├── 8982573.json │ │ │ │ ├── 9000494.json │ │ │ │ ├── 9016159.json │ │ │ │ ├── 9020654.json │ │ │ │ ├── 9035363.json │ │ │ │ ├── 9043892.json │ │ │ │ ├── 9082315.json │ │ │ │ ├── 9132424.json │ │ │ │ ├── 9158119.json │ │ │ │ ├── 9170159.json │ │ │ │ ├── 9174178.json │ │ │ │ ├── 9181070.json │ │ │ │ ├── 9201380.json │ │ │ │ ├── 9257560.json │ │ │ │ ├── 9258422.json │ │ │ │ ├── 9288967.json │ │ │ │ ├── 9356539.json │ │ │ │ ├── 9365158.json │ │ │ │ ├── 9393763.json │ │ │ │ ├── 9411858.json │ │ │ │ ├── 9461429.json │ │ │ │ ├── 9479348.json │ │ │ │ ├── 9482557.json │ │ │ │ ├── 9492400.json │ │ │ │ ├── 9512078.json │ │ │ │ ├── 9529347.json │ │ │ │ ├── 9555207.json │ │ │ │ ├── 9651861.json │ │ │ │ ├── 9656363.json │ │ │ │ ├── 9676808.json │ │ │ │ ├── 9720949.json │ │ │ │ ├── 9729196.json │ │ │ │ ├── 9778468.json │ │ │ │ ├── 9792944.json │ │ │ │ ├── 9801699.json │ │ │ │ ├── 9822811.json │ │ │ │ ├── 9834170.json │ │ │ │ ├── 9869787.json │ │ │ │ ├── 9884143.json │ │ │ │ ├── 9896449.json │ │ │ │ ├── 9906597.json │ │ │ │ ├── 9924070.json │ │ │ │ ├── 9941073.json │ │ │ │ ├── 9967551.json │ │ │ │ └── 9990171.json │ │ │ ├── SARS-CoV-2_variants_KP.3_and_JN.1 │ │ │ │ ├── 10938001.json │ │ │ │ ├── 11289243.json │ │ │ │ ├── 11374805.json │ │ │ │ ├── 11406931.json │ │ │ │ ├── 11407393.json │ │ │ │ ├── 11430188.json │ │ │ │ ├── 11437503.json │ │ │ │ ├── 11461813.json │ │ │ │ ├── 11554226.json │ │ │ │ ├── 11562025.json │ │ │ │ ├── 11599457.json │ │ │ │ ├── 11601353.json │ │ │ │ ├── 11609190.json │ │ │ │ ├── 11630572.json │ │ │ │ ├── 11661143.json │ │ │ │ ├── 11722104.json │ │ │ │ ├── 11722225.json │ │ │ │ └── 11754117.json │ │ │ └── nanobodies │ │ │ │ ├── 10051120.json │ │ │ │ ├── 10054972.json │ │ │ │ ├── 10060843.json │ │ │ │ ├── 10148623.json │ │ │ │ ├── 10167778.json │ │ │ │ ├── 10200341.json │ │ │ │ ├── 10213069.json │ │ │ │ ├── 10231691.json │ │ │ │ ├── 10268213.json │ │ │ │ ├── 10275483.json │ │ │ │ ├── 10301551.json │ │ │ │ ├── 10315470.json │ │ │ │ ├── 10373554.json │ │ │ │ ├── 10444775.json │ │ │ │ ├── 10518403.json │ │ │ │ ├── 10578311.json │ │ │ │ ├── 10588750.json │ │ │ │ ├── 10590698.json │ │ │ │ ├── 10597523.json │ │ │ │ ├── 10688893.json │ │ │ │ ├── 10695562.json │ │ │ │ ├── 10702856.json │ │ │ │ ├── 10715488.json │ │ │ │ ├── 10833066.json │ │ │ │ ├── 10844482.json │ │ │ │ ├── 10858526.json │ │ │ │ ├── 10865538.json │ │ │ │ ├── 10878242.json │ │ │ │ ├── 10891761.json │ │ │ │ ├── 10892724.json │ │ │ │ ├── 10955499.json │ │ │ │ ├── 10966652.json │ │ │ │ ├── 10968798.json │ │ │ │ ├── 10986514.json │ │ │ │ ├── 11003867.json │ │ │ │ ├── 11054741.json │ │ │ │ ├── 11076045.json │ │ │ │ ├── 11091055.json │ │ │ │ ├── 11100608.json │ │ │ │ ├── 11108896.json │ │ │ │ ├── 11133524.json │ │ │ │ ├── 11140111.json │ │ │ │ ├── 11140877.json │ │ │ │ ├── 11148044.json │ │ │ │ ├── 11148769.json │ │ │ │ ├── 11209230.json │ │ │ │ ├── 11211474.json │ │ │ │ ├── 11228396.json │ │ │ │ ├── 11228696.json │ │ │ │ ├── 11277559.json │ │ │ │ ├── 11285730.json │ │ │ │ ├── 11347438.json │ │ │ │ ├── 11361996.json │ │ │ │ ├── 11407660.json │ │ │ │ ├── 11460708.json │ │ │ │ ├── 11481066.json │ │ │ │ ├── 11515141.json │ │ │ │ ├── 11554226.json │ │ │ │ ├── 11609455.json │ │ │ │ ├── 11630572.json │ │ │ │ ├── 11640846.json │ │ │ │ ├── 11650500.json │ │ │ │ ├── 11659936.json │ │ │ │ ├── 11762740.json │ │ │ │ ├── 11788755.json │ │ │ │ ├── 11793827.json │ │ │ │ ├── 5754017.json │ │ │ │ ├── 6640686.json │ │ │ │ ├── 7112682.json │ │ │ │ ├── 7199733.json │ │ │ │ ├── 7224157.json │ │ │ │ ├── 7430568.json │ │ │ │ ├── 7473855.json │ │ │ │ ├── 7483421.json │ │ │ │ ├── 7556756.json │ │ │ │ ├── 7642257.json │ │ │ │ ├── 7642358.json │ │ │ │ ├── 7685322.json │ │ │ │ ├── 7744031.json │ │ │ │ ├── 7755911.json │ │ │ │ ├── 7822889.json │ │ │ │ ├── 7832525.json │ │ │ │ ├── 7833398.json │ │ │ │ ├── 7844813.json │ │ │ │ ├── 7854682.json │ │ │ │ ├── 7857400.json │ │ │ │ ├── 7857409.json │ │ │ │ ├── 7870875.json │ │ │ │ ├── 7932109.json │ │ │ │ ├── 7959386.json │ │ │ │ ├── 8006950.json │ │ │ │ ├── 8021111.json │ │ │ │ ├── 8043454.json │ │ │ │ ├── 8061467.json │ │ │ │ ├── 8097376.json │ │ │ │ ├── 8126837.json │ │ │ │ ├── 8139655.json │ │ │ │ ├── 8193598.json │ │ │ │ ├── 8201996.json │ │ │ │ ├── 8221914.json │ │ │ │ ├── 8223476.json │ │ │ │ ├── 8248807.json │ │ │ │ ├── 8260353.json │ │ │ │ ├── 8301790.json │ │ │ │ ├── 8324831.json │ │ │ │ ├── 8325376.json │ │ │ │ ├── 8333356.json │ │ │ │ ├── 8344751.json │ │ │ │ ├── 8351461.json │ │ │ │ ├── 8354634.json │ │ │ │ ├── 8368053.json │ │ │ │ ├── 8420576.json │ │ │ │ ├── 8447893.json │ │ │ │ ├── 8448731.json │ │ │ │ ├── 8451865.json │ │ │ │ ├── 8458290.json │ │ │ │ ├── 8463502.json │ │ │ │ ├── 8465657.json │ │ │ │ ├── 8476643.json │ │ │ │ ├── 8491763.json │ │ │ │ ├── 8514607.json │ │ │ │ ├── 8528929.json │ │ │ │ ├── 8564274.json │ │ │ │ ├── 8597880.json │ │ │ │ ├── 8606259.json │ │ │ │ ├── 8625641.json │ │ │ │ ├── 8646660.json │ │ │ │ ├── 8651292.json │ │ │ │ ├── 8699001.json │ │ │ │ ├── 8700021.json │ │ │ │ ├── 8724751.json │ │ │ │ ├── 8726723.json │ │ │ │ ├── 8730734.json │ │ │ │ ├── 8748511.json │ │ │ │ ├── 8768012.json │ │ │ │ ├── 8771608.json │ │ │ │ ├── 8782626.json │ │ │ │ ├── 8811630.json │ │ │ │ ├── 8828845.json │ │ │ │ ├── 8853550.json │ │ │ │ ├── 8863326.json │ │ │ │ ├── 8877688.json │ │ │ │ ├── 8906176.json │ │ │ │ ├── 8907017.json │ │ │ │ ├── 8907979.json │ │ │ │ ├── 8908544.json │ │ │ │ ├── 8924699.json │ │ │ │ ├── 8928829.json │ │ │ │ ├── 8951411.json │ │ │ │ ├── 8956255.json │ │ │ │ ├── 8967979.json │ │ │ │ ├── 8971115.json │ │ │ │ ├── 8982573.json │ │ │ │ ├── 9020654.json │ │ │ │ ├── 9063451.json │ │ │ │ ├── 9082315.json │ │ │ │ ├── 9113008.json │ │ │ │ ├── 9132424.json │ │ │ │ ├── 9150821.json │ │ │ │ ├── 9169858.json │ │ │ │ ├── 9170159.json │ │ │ │ ├── 9174178.json │ │ │ │ ├── 9181103.json │ │ │ │ ├── 9219022.json │ │ │ │ ├── 9230756.json │ │ │ │ ├── 9257560.json │ │ │ │ ├── 9288967.json │ │ │ │ ├── 9313406.json │ │ │ │ ├── 9334538.json │ │ │ │ ├── 9351521.json │ │ │ │ ├── 9355996.json │ │ │ │ ├── 9356539.json │ │ │ │ ├── 9365158.json │ │ │ │ ├── 9392344.json │ │ │ │ ├── 9393763.json │ │ │ │ ├── 9407951.json │ │ │ │ ├── 9411660.json │ │ │ │ ├── 9411858.json │ │ │ │ ├── 9461429.json │ │ │ │ ├── 9479348.json │ │ │ │ ├── 9481167.json │ │ │ │ ├── 9482557.json │ │ │ │ ├── 9491202.json │ │ │ │ ├── 9512078.json │ │ │ │ ├── 9524272.json │ │ │ │ ├── 9529347.json │ │ │ │ ├── 9651861.json │ │ │ │ ├── 9656363.json │ │ │ │ ├── 9676808.json │ │ │ │ ├── 9678391.json │ │ │ │ ├── 9688389.json │ │ │ │ ├── 9734137.json │ │ │ │ ├── 9792944.json │ │ │ │ ├── 9797221.json │ │ │ │ ├── 9801699.json │ │ │ │ ├── 9834170.json │ │ │ │ ├── 9850341.json │ │ │ │ ├── 9869787.json │ │ │ │ ├── 9884143.json │ │ │ │ ├── 9896449.json │ │ │ │ ├── 9900178.json │ │ │ │ ├── 9941073.json │ │ │ │ └── 9966208.json │ │ ├── summaries │ │ │ ├── AlphaFold-Multimer │ │ │ │ ├── 10011802.json │ │ │ │ ├── 10090944.json │ │ │ │ ├── 10113261.json │ │ │ │ ├── 10129313.json │ │ │ │ ├── 10136805.json │ │ │ │ ├── 10151615.json │ │ │ │ ├── 10165273.json │ │ │ │ ├── 10227038.json │ │ │ │ ├── 10246253.json │ │ │ │ ├── 10274727.json │ │ │ │ ├── 10281963.json │ │ │ │ ├── 10285254.json │ │ │ │ ├── 10312770.json │ │ │ │ ├── 10320053.json │ │ │ │ ├── 10348836.json │ │ │ │ ├── 10349958.json │ │ │ │ ├── 10356834.json │ │ │ │ ├── 10402144.json │ │ │ │ ├── 10484931.json │ │ │ │ ├── 10497406.json │ │ │ │ ├── 10497418.json │ │ │ │ ├── 10533508.json │ │ │ │ ├── 10534052.json │ │ │ │ ├── 10540290.json │ │ │ │ ├── 10554751.json │ │ │ │ ├── 10613300.json │ │ │ │ ├── 10638423.json │ │ │ │ ├── 10692239.json │ │ │ │ ├── 10707872.json │ │ │ │ ├── 10760632.json │ │ │ │ ├── 10808870.json │ │ │ │ ├── 10827046.json │ │ │ │ ├── 10844748.json │ │ │ │ ├── 10865538.json │ │ │ │ ├── 10879169.json │ │ │ │ ├── 10883280.json │ │ │ │ ├── 10883643.json │ │ │ │ ├── 10886287.json │ │ │ │ ├── 10887370.json │ │ │ │ ├── 10893003.json │ │ │ │ ├── 10933411.json │ │ │ │ ├── 10966450.json │ │ │ │ ├── 10987090.json │ │ │ │ ├── 10987651.json │ │ │ │ ├── 11009965.json │ │ │ │ ├── 11016909.json │ │ │ │ ├── 11030396.json │ │ │ │ ├── 11052572.json │ │ │ │ ├── 11065178.json │ │ │ │ ├── 11070728.json │ │ │ │ ├── 11112044.json │ │ │ │ ├── 11116810.json │ │ │ │ ├── 11117562.json │ │ │ │ ├── 11148199.json │ │ │ │ ├── 11157076.json │ │ │ │ ├── 11162299.json │ │ │ │ ├── 11168924.json │ │ │ │ ├── 11188072.json │ │ │ │ ├── 11218997.json │ │ │ │ ├── 11228504.json │ │ │ │ ├── 11230293.json │ │ │ │ ├── 11281715.json │ │ │ │ ├── 11294035.json │ │ │ │ ├── 11302914.json │ │ │ │ ├── 11319189.json │ │ │ │ ├── 11321591.json │ │ │ │ ├── 11383924.json │ │ │ │ ├── 11392808.json │ │ │ │ ├── 11405125.json │ │ │ │ ├── 11405395.json │ │ │ │ ├── 11461844.json │ │ │ │ ├── 11468914.json │ │ │ │ ├── 11474105.json │ │ │ │ ├── 11481066.json │ │ │ │ ├── 11483107.json │ │ │ │ ├── 11507785.json │ │ │ │ ├── 11513016.json │ │ │ │ ├── 11543627.json │ │ │ │ ├── 11564622.json │ │ │ │ ├── 11575592.json │ │ │ │ ├── 11578886.json │ │ │ │ ├── 11623436.json │ │ │ │ ├── 11659936.json │ │ │ │ ├── 11697402.json │ │ │ │ ├── 11702601.json │ │ │ │ ├── 11702703.json │ │ │ │ ├── 11754096.json │ │ │ │ ├── 11763140.json │ │ │ │ ├── 11775587.json │ │ │ │ ├── 11783119.json │ │ │ │ ├── 11788748.json │ │ │ │ ├── 11788754.json │ │ │ │ ├── 11788755.json │ │ │ │ ├── 11793827.json │ │ │ │ ├── 11799971.json │ │ │ │ ├── 11800653.json │ │ │ │ ├── 8874714.json │ │ │ │ ├── 9094657.json │ │ │ │ ├── 9234698.json │ │ │ │ ├── 9278006.json │ │ │ │ ├── 9406418.json │ │ │ │ ├── 9459051.json │ │ │ │ ├── 9570074.json │ │ │ │ ├── 9580857.json │ │ │ │ ├── 9674347.json │ │ │ │ ├── 9758053.json │ │ │ │ ├── 9772387.json │ │ │ │ ├── 9846249.json │ │ │ │ ├── 9850923.json │ │ │ │ ├── 9859041.json │ │ │ │ ├── 9907820.json │ │ │ │ ├── 9957715.json │ │ │ │ ├── 9973325.json │ │ │ │ └── 9992458.json │ │ │ ├── ESM │ │ │ │ ├── 10220908.json │ │ │ │ ├── 10370091.json │ │ │ │ ├── 10589401.json │ │ │ │ ├── 10698008.json │ │ │ │ ├── 10792694.json │ │ │ │ ├── 10831124.json │ │ │ │ ├── 10869273.json │ │ │ │ ├── 10886287.json │ │ │ │ ├── 10925456.json │ │ │ │ ├── 10942297.json │ │ │ │ ├── 10942313.json │ │ │ │ ├── 10978573.json │ │ │ │ ├── 11036486.json │ │ │ │ ├── 11057648.json │ │ │ │ ├── 11066466.json │ │ │ │ ├── 11128484.json │ │ │ │ ├── 11208048.json │ │ │ │ ├── 11221890.json │ │ │ │ ├── 11226077.json │ │ │ │ ├── 11254834.json │ │ │ │ ├── 11275918.json │ │ │ │ ├── 11326577.json │ │ │ │ ├── 11330463.json │ │ │ │ ├── 11466415.json │ │ │ │ ├── 11477718.json │ │ │ │ ├── 11507661.json │ │ │ │ ├── 11601519.json │ │ │ │ ├── 11614202.json │ │ │ │ ├── 11701548.json │ │ │ │ ├── 11725859.json │ │ │ │ ├── 11730357.json │ │ │ │ ├── 11745544.json │ │ │ │ ├── 11745815.json │ │ │ │ ├── 11747409.json │ │ │ │ ├── 11750110.json │ │ │ │ ├── 11751191.json │ │ │ │ ├── 11751364.json │ │ │ │ ├── 11753890.json │ │ │ │ ├── 11783280.json │ │ │ │ ├── 11783440.json │ │ │ │ ├── 11788748.json │ │ │ │ ├── 11794456.json │ │ │ │ ├── 11796103.json │ │ │ │ ├── 11796362.json │ │ │ │ ├── 9294429.json │ │ │ │ └── 9720949.json │ │ │ ├── Rosetta │ │ │ │ ├── 10069166.json │ │ │ │ ├── 10301038.json │ │ │ │ ├── 10361724.json │ │ │ │ ├── 10402144.json │ │ │ │ ├── 10462100.json │ │ │ │ ├── 10468394.json │ │ │ │ ├── 10509195.json │ │ │ │ ├── 10858482.json │ │ │ │ ├── 10965422.json │ │ │ │ ├── 10975102.json │ │ │ │ ├── 10983868.json │ │ │ │ ├── 11031966.json │ │ │ │ ├── 11036486.json │ │ │ │ ├── 11040732.json │ │ │ │ ├── 11055898.json │ │ │ │ ├── 7500280.json │ │ │ │ ├── 7603796.json │ │ │ │ ├── 7992133.json │ │ │ │ ├── 7993800.json │ │ │ │ ├── 7995276.json │ │ │ │ ├── 7999226.json │ │ │ │ ├── 8225355.json │ │ │ │ ├── 8225619.json │ │ │ │ ├── 8389498.json │ │ │ │ ├── 8590000.json │ │ │ │ ├── 8765073.json │ │ │ │ ├── 8967028.json │ │ │ │ ├── 9015148.json │ │ │ │ ├── 9628197.json │ │ │ │ ├── 9683856.json │ │ │ │ ├── 9934699.json │ │ │ │ └── 9936628.json │ │ │ ├── SARS-CoV-2_spike_protein │ │ │ │ ├── 10013841.json │ │ │ │ ├── 10028217.json │ │ │ │ ├── 10042144.json │ │ │ │ ├── 10051120.json │ │ │ │ ├── 10054972.json │ │ │ │ ├── 10060843.json │ │ │ │ ├── 10114651.json │ │ │ │ ├── 10148623.json │ │ │ │ ├── 10154539.json │ │ │ │ ├── 10170451.json │ │ │ │ ├── 10238279.json │ │ │ │ ├── 10251734.json │ │ │ │ ├── 10265947.json │ │ │ │ ├── 10268213.json │ │ │ │ ├── 10275483.json │ │ │ │ ├── 10294592.json │ │ │ │ ├── 10301551.json │ │ │ │ ├── 10302031.json │ │ │ │ ├── 10303109.json │ │ │ │ ├── 10330301.json │ │ │ │ ├── 10373554.json │ │ │ │ ├── 10384293.json │ │ │ │ ├── 10386765.json │ │ │ │ ├── 10444775.json │ │ │ │ ├── 10445546.json │ │ │ │ ├── 10507807.json │ │ │ │ ├── 10517151.json │ │ │ │ ├── 10518403.json │ │ │ │ ├── 10532743.json │ │ │ │ ├── 10536364.json │ │ │ │ ├── 10562541.json │ │ │ │ ├── 10588750.json │ │ │ │ ├── 10590698.json │ │ │ │ ├── 10615762.json │ │ │ │ ├── 10636138.json │ │ │ │ ├── 10663135.json │ │ │ │ ├── 10664894.json │ │ │ │ ├── 10683510.json │ │ │ │ ├── 10688893.json │ │ │ │ ├── 10695562.json │ │ │ │ ├── 10715488.json │ │ │ │ ├── 10757926.json │ │ │ │ ├── 10847457.json │ │ │ │ ├── 10858482.json │ │ │ │ ├── 10858559.json │ │ │ │ ├── 10865538.json │ │ │ │ ├── 10865805.json │ │ │ │ ├── 10878242.json │ │ │ │ ├── 10886287.json │ │ │ │ ├── 10892724.json │ │ │ │ ├── 10954308.json │ │ │ │ ├── 10968798.json │ │ │ │ ├── 10985062.json │ │ │ │ ├── 10986514.json │ │ │ │ ├── 10986611.json │ │ │ │ ├── 11054741.json │ │ │ │ ├── 11076045.json │ │ │ │ ├── 11099193.json │ │ │ │ ├── 11100608.json │ │ │ │ ├── 11133524.json │ │ │ │ ├── 11140640.json │ │ │ │ ├── 11140877.json │ │ │ │ ├── 11148044.json │ │ │ │ ├── 11200683.json │ │ │ │ ├── 11209230.json │ │ │ │ ├── 11211474.json │ │ │ │ ├── 11236199.json │ │ │ │ ├── 11254834.json │ │ │ │ ├── 11277385.json │ │ │ │ ├── 11285730.json │ │ │ │ ├── 11311977.json │ │ │ │ ├── 11324105.json │ │ │ │ ├── 11324185.json │ │ │ │ ├── 11389415.json │ │ │ │ ├── 11401216.json │ │ │ │ ├── 11481066.json │ │ │ │ ├── 11515141.json │ │ │ │ ├── 11528319.json │ │ │ │ ├── 11530565.json │ │ │ │ ├── 11551432.json │ │ │ │ ├── 11562025.json │ │ │ │ ├── 11609190.json │ │ │ │ ├── 11614295.json │ │ │ │ ├── 11630572.json │ │ │ │ ├── 11650500.json │ │ │ │ ├── 11666439.json │ │ │ │ ├── 11668528.json │ │ │ │ ├── 11679499.json │ │ │ │ ├── 11723632.json │ │ │ │ ├── 11768830.json │ │ │ │ ├── 11793827.json │ │ │ │ ├── 7430568.json │ │ │ │ ├── 7443330.json │ │ │ │ ├── 7473855.json │ │ │ │ ├── 7685322.json │ │ │ │ ├── 7820838.json │ │ │ │ ├── 7822889.json │ │ │ │ ├── 7833398.json │ │ │ │ ├── 7844813.json │ │ │ │ ├── 7857409.json │ │ │ │ ├── 7870875.json │ │ │ │ ├── 7891930.json │ │ │ │ ├── 7932109.json │ │ │ │ ├── 8043454.json │ │ │ │ ├── 8077567.json │ │ │ │ ├── 8097376.json │ │ │ │ ├── 8126837.json │ │ │ │ ├── 8181738.json │ │ │ │ ├── 8193598.json │ │ │ │ ├── 8194341.json │ │ │ │ ├── 8202428.json │ │ │ │ ├── 8223476.json │ │ │ │ ├── 8232969.json │ │ │ │ ├── 8248807.json │ │ │ │ ├── 8260353.json │ │ │ │ ├── 8354634.json │ │ │ │ ├── 8420576.json │ │ │ │ ├── 8448731.json │ │ │ │ ├── 8458290.json │ │ │ │ ├── 8463300.json │ │ │ │ ├── 8514607.json │ │ │ │ ├── 8515575.json │ │ │ │ ├── 8526496.json │ │ │ │ ├── 8537675.json │ │ │ │ ├── 8564274.json │ │ │ │ ├── 8575140.json │ │ │ │ ├── 8597880.json │ │ │ │ ├── 8608585.json │ │ │ │ ├── 8646660.json │ │ │ │ ├── 8651051.json │ │ │ │ ├── 8651292.json │ │ │ │ ├── 8677774.json │ │ │ │ ├── 8700021.json │ │ │ │ ├── 8724751.json │ │ │ │ ├── 8726723.json │ │ │ │ ├── 8730734.json │ │ │ │ ├── 8748511.json │ │ │ │ ├── 8771608.json │ │ │ │ ├── 8776496.json │ │ │ │ ├── 8782626.json │ │ │ │ ├── 8828845.json │ │ │ │ ├── 8837488.json │ │ │ │ ├── 8853550.json │ │ │ │ ├── 8863326.json │ │ │ │ ├── 8877688.json │ │ │ │ ├── 8890389.json │ │ │ │ ├── 8899823.json │ │ │ │ ├── 8908544.json │ │ │ │ ├── 8920968.json │ │ │ │ ├── 8928829.json │ │ │ │ ├── 8950575.json │ │ │ │ ├── 8951411.json │ │ │ │ ├── 8956255.json │ │ │ │ ├── 8967028.json │ │ │ │ ├── 8971115.json │ │ │ │ ├── 8982573.json │ │ │ │ ├── 9000494.json │ │ │ │ ├── 9016159.json │ │ │ │ ├── 9020654.json │ │ │ │ ├── 9035363.json │ │ │ │ ├── 9043892.json │ │ │ │ ├── 9082315.json │ │ │ │ ├── 9132424.json │ │ │ │ ├── 9158119.json │ │ │ │ ├── 9170159.json │ │ │ │ ├── 9174178.json │ │ │ │ ├── 9181070.json │ │ │ │ ├── 9201380.json │ │ │ │ ├── 9257560.json │ │ │ │ ├── 9258422.json │ │ │ │ ├── 9288967.json │ │ │ │ ├── 9356539.json │ │ │ │ ├── 9365158.json │ │ │ │ ├── 9393763.json │ │ │ │ ├── 9411858.json │ │ │ │ ├── 9461429.json │ │ │ │ ├── 9479348.json │ │ │ │ ├── 9482557.json │ │ │ │ ├── 9492400.json │ │ │ │ ├── 9512078.json │ │ │ │ ├── 9529347.json │ │ │ │ ├── 9555207.json │ │ │ │ ├── 9651861.json │ │ │ │ ├── 9656363.json │ │ │ │ ├── 9676808.json │ │ │ │ ├── 9720949.json │ │ │ │ ├── 9729196.json │ │ │ │ ├── 9778468.json │ │ │ │ ├── 9792944.json │ │ │ │ ├── 9801699.json │ │ │ │ ├── 9822811.json │ │ │ │ ├── 9834170.json │ │ │ │ ├── 9869787.json │ │ │ │ ├── 9884143.json │ │ │ │ ├── 9896449.json │ │ │ │ ├── 9906597.json │ │ │ │ ├── 9924070.json │ │ │ │ ├── 9941073.json │ │ │ │ ├── 9967551.json │ │ │ │ └── 9990171.json │ │ │ ├── SARS-CoV-2_variants_KP.3_and_JN.1 │ │ │ │ ├── 10938001.json │ │ │ │ ├── 11289243.json │ │ │ │ ├── 11374805.json │ │ │ │ ├── 11406931.json │ │ │ │ ├── 11407393.json │ │ │ │ ├── 11430188.json │ │ │ │ ├── 11437503.json │ │ │ │ ├── 11461813.json │ │ │ │ ├── 11554226.json │ │ │ │ ├── 11562025.json │ │ │ │ ├── 11599457.json │ │ │ │ ├── 11601353.json │ │ │ │ ├── 11609190.json │ │ │ │ ├── 11630572.json │ │ │ │ ├── 11661143.json │ │ │ │ ├── 11722104.json │ │ │ │ ├── 11722225.json │ │ │ │ └── 11754117.json │ │ │ └── nanobodies │ │ │ │ ├── 10051120.json │ │ │ │ ├── 10054972.json │ │ │ │ ├── 10060843.json │ │ │ │ ├── 10148623.json │ │ │ │ ├── 10167778.json │ │ │ │ ├── 10200341.json │ │ │ │ ├── 10213069.json │ │ │ │ ├── 10231691.json │ │ │ │ ├── 10268213.json │ │ │ │ ├── 10275483.json │ │ │ │ ├── 10301551.json │ │ │ │ ├── 10315470.json │ │ │ │ ├── 10373554.json │ │ │ │ ├── 10444775.json │ │ │ │ ├── 10518403.json │ │ │ │ ├── 10578311.json │ │ │ │ ├── 10588750.json │ │ │ │ ├── 10590698.json │ │ │ │ ├── 10597523.json │ │ │ │ ├── 10688893.json │ │ │ │ ├── 10695562.json │ │ │ │ ├── 10702856.json │ │ │ │ ├── 10715488.json │ │ │ │ ├── 10833066.json │ │ │ │ ├── 10844482.json │ │ │ │ ├── 10858526.json │ │ │ │ ├── 10865538.json │ │ │ │ ├── 10878242.json │ │ │ │ ├── 10891761.json │ │ │ │ ├── 10892724.json │ │ │ │ ├── 10955499.json │ │ │ │ ├── 10966652.json │ │ │ │ ├── 10968798.json │ │ │ │ ├── 10986514.json │ │ │ │ ├── 11003867.json │ │ │ │ ├── 11054741.json │ │ │ │ ├── 11076045.json │ │ │ │ ├── 11091055.json │ │ │ │ ├── 11100608.json │ │ │ │ ├── 11108896.json │ │ │ │ ├── 11133524.json │ │ │ │ ├── 11140111.json │ │ │ │ ├── 11140877.json │ │ │ │ ├── 11148044.json │ │ │ │ ├── 11148769.json │ │ │ │ ├── 11209230.json │ │ │ │ ├── 11211474.json │ │ │ │ ├── 11228396.json │ │ │ │ ├── 11228696.json │ │ │ │ ├── 11277559.json │ │ │ │ ├── 11285730.json │ │ │ │ ├── 11347438.json │ │ │ │ ├── 11361996.json │ │ │ │ ├── 11407660.json │ │ │ │ ├── 11460708.json │ │ │ │ ├── 11481066.json │ │ │ │ ├── 11515141.json │ │ │ │ ├── 11554226.json │ │ │ │ ├── 11609455.json │ │ │ │ ├── 11630572.json │ │ │ │ ├── 11640846.json │ │ │ │ ├── 11650500.json │ │ │ │ ├── 11659936.json │ │ │ │ ├── 11762740.json │ │ │ │ ├── 11788755.json │ │ │ │ ├── 11793827.json │ │ │ │ ├── 5754017.json │ │ │ │ ├── 6640686.json │ │ │ │ ├── 7112682.json │ │ │ │ ├── 7199733.json │ │ │ │ ├── 7224157.json │ │ │ │ ├── 7430568.json │ │ │ │ ├── 7473855.json │ │ │ │ ├── 7483421.json │ │ │ │ ├── 7556756.json │ │ │ │ ├── 7642257.json │ │ │ │ ├── 7642358.json │ │ │ │ ├── 7685322.json │ │ │ │ ├── 7744031.json │ │ │ │ ├── 7755911.json │ │ │ │ ├── 7822889.json │ │ │ │ ├── 7832525.json │ │ │ │ ├── 7833398.json │ │ │ │ ├── 7844813.json │ │ │ │ ├── 7854682.json │ │ │ │ ├── 7857400.json │ │ │ │ ├── 7857409.json │ │ │ │ ├── 7870875.json │ │ │ │ ├── 7932109.json │ │ │ │ ├── 7959386.json │ │ │ │ ├── 8006950.json │ │ │ │ ├── 8021111.json │ │ │ │ ├── 8043454.json │ │ │ │ ├── 8061467.json │ │ │ │ ├── 8097376.json │ │ │ │ ├── 8126837.json │ │ │ │ ├── 8139655.json │ │ │ │ ├── 8193598.json │ │ │ │ ├── 8201996.json │ │ │ │ ├── 8221914.json │ │ │ │ ├── 8223476.json │ │ │ │ ├── 8248807.json │ │ │ │ ├── 8260353.json │ │ │ │ ├── 8301790.json │ │ │ │ ├── 8324831.json │ │ │ │ ├── 8325376.json │ │ │ │ ├── 8333356.json │ │ │ │ ├── 8344751.json │ │ │ │ ├── 8351461.json │ │ │ │ ├── 8354634.json │ │ │ │ ├── 8368053.json │ │ │ │ ├── 8420576.json │ │ │ │ ├── 8447893.json │ │ │ │ ├── 8448731.json │ │ │ │ ├── 8451865.json │ │ │ │ ├── 8458290.json │ │ │ │ ├── 8463502.json │ │ │ │ ├── 8465657.json │ │ │ │ ├── 8476643.json │ │ │ │ ├── 8491763.json │ │ │ │ ├── 8514607.json │ │ │ │ ├── 8528929.json │ │ │ │ ├── 8564274.json │ │ │ │ ├── 8597880.json │ │ │ │ ├── 8606259.json │ │ │ │ ├── 8625641.json │ │ │ │ ├── 8646660.json │ │ │ │ ├── 8651292.json │ │ │ │ ├── 8699001.json │ │ │ │ ├── 8700021.json │ │ │ │ ├── 8724751.json │ │ │ │ ├── 8726723.json │ │ │ │ ├── 8730734.json │ │ │ │ ├── 8748511.json │ │ │ │ ├── 8768012.json │ │ │ │ ├── 8771608.json │ │ │ │ ├── 8782626.json │ │ │ │ ├── 8811630.json │ │ │ │ ├── 8828845.json │ │ │ │ ├── 8853550.json │ │ │ │ ├── 8863326.json │ │ │ │ ├── 8877688.json │ │ │ │ ├── 8906176.json │ │ │ │ ├── 8907017.json │ │ │ │ ├── 8907979.json │ │ │ │ ├── 8908544.json │ │ │ │ ├── 8924699.json │ │ │ │ ├── 8928829.json │ │ │ │ ├── 8951411.json │ │ │ │ ├── 8956255.json │ │ │ │ ├── 8967979.json │ │ │ │ ├── 8971115.json │ │ │ │ ├── 8982573.json │ │ │ │ ├── 9020654.json │ │ │ │ ├── 9063451.json │ │ │ │ ├── 9082315.json │ │ │ │ ├── 9113008.json │ │ │ │ ├── 9132424.json │ │ │ │ ├── 9150821.json │ │ │ │ ├── 9169858.json │ │ │ │ ├── 9170159.json │ │ │ │ ├── 9174178.json │ │ │ │ ├── 9181103.json │ │ │ │ ├── 9219022.json │ │ │ │ ├── 9230756.json │ │ │ │ ├── 9257560.json │ │ │ │ ├── 9288967.json │ │ │ │ ├── 9313406.json │ │ │ │ ├── 9334538.json │ │ │ │ ├── 9351521.json │ │ │ │ ├── 9355996.json │ │ │ │ ├── 9356539.json │ │ │ │ ├── 9365158.json │ │ │ │ ├── 9392344.json │ │ │ │ ├── 9393763.json │ │ │ │ ├── 9407951.json │ │ │ │ ├── 9411660.json │ │ │ │ ├── 9411858.json │ │ │ │ ├── 9461429.json │ │ │ │ ├── 9479348.json │ │ │ │ ├── 9481167.json │ │ │ │ ├── 9482557.json │ │ │ │ ├── 9491202.json │ │ │ │ ├── 9512078.json │ │ │ │ ├── 9524272.json │ │ │ │ ├── 9529347.json │ │ │ │ ├── 9651861.json │ │ │ │ ├── 9656363.json │ │ │ │ ├── 9676808.json │ │ │ │ ├── 9678391.json │ │ │ │ ├── 9688389.json │ │ │ │ ├── 9734137.json │ │ │ │ ├── 9792944.json │ │ │ │ ├── 9797221.json │ │ │ │ ├── 9801699.json │ │ │ │ ├── 9834170.json │ │ │ │ ├── 9850341.json │ │ │ │ ├── 9869787.json │ │ │ │ ├── 9884143.json │ │ │ │ ├── 9896449.json │ │ │ │ ├── 9900178.json │ │ │ │ ├── 9941073.json │ │ │ │ └── 9966208.json │ │ └── topic_to_id.json │ ├── human_eval │ │ ├── 10_generic_single.json │ │ ├── 10_generic_single.md │ │ ├── 10_generic_team.json │ │ ├── 10_generic_team.md │ │ ├── 10_scientist_agents.json │ │ ├── 10_scientist_agents.md │ │ ├── 10_scientist_team.json │ │ ├── 10_scientist_team.md │ │ ├── 11_generic_single.json │ │ ├── 11_generic_single.md │ │ ├── 11_generic_team.json │ │ ├── 11_generic_team.md │ │ ├── 11_scientist_agents.json │ │ ├── 11_scientist_agents.md │ │ ├── 11_scientist_team.json │ │ ├── 11_scientist_team.md │ │ ├── 12_generic_single.json │ │ ├── 12_generic_single.md │ │ ├── 12_generic_team.json │ │ ├── 12_generic_team.md │ │ ├── 12_scientist_agents.json │ │ ├── 12_scientist_agents.md │ │ ├── 12_scientist_team.json │ │ ├── 12_scientist_team.md │ │ ├── 13_generic_single.json │ │ ├── 13_generic_single.md │ │ ├── 13_generic_team.json │ │ ├── 13_generic_team.md │ │ ├── 13_scientist_agents.json │ │ ├── 13_scientist_agents.md │ │ ├── 13_scientist_team.json │ │ ├── 13_scientist_team.md │ │ ├── 14_generic_single.json │ │ ├── 14_generic_single.md │ │ ├── 14_generic_team.json │ │ ├── 14_generic_team.md │ │ ├── 14_scientist_agents.json │ │ ├── 14_scientist_agents.md │ │ ├── 14_scientist_team.json │ │ ├── 14_scientist_team.md │ │ ├── 15_generic_single.json │ │ ├── 15_generic_single.md │ │ ├── 15_generic_team.json │ │ ├── 15_generic_team.md │ │ ├── 15_scientist_agents.json │ │ ├── 15_scientist_agents.md │ │ ├── 15_scientist_team.json │ │ ├── 15_scientist_team.md │ │ ├── 16_generic_single.json │ │ ├── 16_generic_single.md │ │ ├── 16_generic_team.json │ │ ├── 16_generic_team.md │ │ ├── 16_scientist_agents.json │ │ ├── 16_scientist_agents.md │ │ ├── 16_scientist_team.json │ │ ├── 16_scientist_team.md │ │ ├── 17_generic_single.json │ │ ├── 17_generic_single.md │ │ ├── 17_generic_team.json │ │ ├── 17_generic_team.md │ │ ├── 17_scientist_agents.json │ │ ├── 17_scientist_agents.md │ │ ├── 17_scientist_team.json │ │ ├── 17_scientist_team.md │ │ ├── 18_generic_single.json │ │ ├── 18_generic_single.md │ │ ├── 18_generic_team.json │ │ ├── 18_generic_team.md │ │ ├── 18_scientist_agents.json │ │ ├── 18_scientist_agents.md │ │ ├── 18_scientist_team.json │ │ ├── 18_scientist_team.md │ │ ├── 19_generic_single.json │ │ ├── 19_generic_single.md │ │ ├── 19_generic_team.json │ │ ├── 19_generic_team.md │ │ ├── 19_scientist_agents.json │ │ ├── 19_scientist_agents.md │ │ ├── 19_scientist_team.json │ │ ├── 19_scientist_team.md │ │ ├── 1_generic_single.json │ │ ├── 1_generic_single.md │ │ ├── 1_generic_team.json │ │ ├── 1_generic_team.md │ │ ├── 1_scientist_agents.json │ │ ├── 1_scientist_agents.md │ │ ├── 1_scientist_team.json │ │ ├── 1_scientist_team.md │ │ ├── 20_generic_single.json │ │ ├── 20_generic_single.md │ │ ├── 20_generic_team.json │ │ ├── 20_generic_team.md │ │ ├── 20_scientist_agents.json │ │ ├── 20_scientist_agents.md │ │ ├── 20_scientist_team.json │ │ ├── 20_scientist_team.md │ │ ├── 21_generic_single.json │ │ ├── 21_generic_single.md │ │ ├── 21_generic_team.json │ │ ├── 21_generic_team.md │ │ ├── 21_scientist_agents.json │ │ ├── 21_scientist_agents.md │ │ ├── 21_scientist_team.json │ │ ├── 21_scientist_team.md │ │ ├── 22_generic_single.json │ │ ├── 22_generic_single.md │ │ ├── 22_generic_team.json │ │ ├── 22_generic_team.md │ │ ├── 22_scientist_agents.json │ │ ├── 22_scientist_agents.md │ │ ├── 22_scientist_team.json │ │ ├── 22_scientist_team.md │ │ ├── 23_generic_single.json │ │ ├── 23_generic_single.md │ │ ├── 23_generic_team.json │ │ ├── 23_generic_team.md │ │ ├── 23_scientist_agents.json │ │ ├── 23_scientist_agents.md │ │ ├── 23_scientist_team.json │ │ ├── 23_scientist_team.md │ │ ├── 24_generic_single.json │ │ ├── 24_generic_single.md │ │ ├── 24_generic_team.json │ │ ├── 24_generic_team.md │ │ ├── 24_scientist_agents.json │ │ ├── 24_scientist_agents.md │ │ ├── 24_scientist_team.json │ │ ├── 24_scientist_team.md │ │ ├── 25_generic_single.json │ │ ├── 25_generic_single.md │ │ ├── 25_generic_team.json │ │ ├── 25_generic_team.md │ │ ├── 25_scientist_agents.json │ │ ├── 25_scientist_agents.md │ │ ├── 25_scientist_team.json │ │ ├── 25_scientist_team.md │ │ ├── 26_generic_single.json │ │ ├── 26_generic_single.md │ │ ├── 26_generic_team.json │ │ ├── 26_generic_team.md │ │ ├── 26_scientist_agents.json │ │ ├── 26_scientist_agents.md │ │ ├── 26_scientist_team.json │ │ ├── 26_scientist_team.md │ │ ├── 27_generic_single.json │ │ ├── 27_generic_single.md │ │ ├── 27_generic_team.json │ │ ├── 27_generic_team.md │ │ ├── 27_scientist_agents.json │ │ ├── 27_scientist_agents.md │ │ ├── 27_scientist_team.json │ │ ├── 27_scientist_team.md │ │ ├── 28_generic_single.json │ │ ├── 28_generic_single.md │ │ ├── 28_generic_team.json │ │ ├── 28_generic_team.md │ │ ├── 28_scientist_agents.json │ │ ├── 28_scientist_agents.md │ │ ├── 28_scientist_team.json │ │ ├── 28_scientist_team.md │ │ ├── 29_generic_single.json │ │ ├── 29_generic_single.md │ │ ├── 29_generic_team.json │ │ ├── 29_generic_team.md │ │ ├── 29_scientist_agents.json │ │ ├── 29_scientist_agents.md │ │ ├── 29_scientist_team.json │ │ ├── 29_scientist_team.md │ │ ├── 2_generic_single.json │ │ ├── 2_generic_single.md │ │ ├── 2_generic_team.json │ │ ├── 2_generic_team.md │ │ ├── 2_scientist_agents.json │ │ ├── 2_scientist_agents.md │ │ ├── 2_scientist_team.json │ │ ├── 2_scientist_team.md │ │ ├── 30_generic_single.json │ │ ├── 30_generic_single.md │ │ ├── 30_generic_team.json │ │ ├── 30_generic_team.md │ │ ├── 30_scientist_agents.json │ │ ├── 30_scientist_agents.md │ │ ├── 30_scientist_team.json │ │ ├── 30_scientist_team.md │ │ ├── 3_generic_single.json │ │ ├── 3_generic_single.md │ │ ├── 3_generic_team.json │ │ ├── 3_generic_team.md │ │ ├── 3_scientist_agents.json │ │ ├── 3_scientist_agents.md │ │ ├── 3_scientist_team.json │ │ ├── 3_scientist_team.md │ │ ├── 4_generic_single.json │ │ ├── 4_generic_single.md │ │ ├── 4_generic_team.json │ │ ├── 4_generic_team.md │ │ ├── 4_scientist_agents.json │ │ ├── 4_scientist_agents.md │ │ ├── 4_scientist_team.json │ │ ├── 4_scientist_team.md │ │ ├── 5_generic_single.json │ │ ├── 5_generic_single.md │ │ ├── 5_generic_team.json │ │ ├── 5_generic_team.md │ │ ├── 5_scientist_agents.json │ │ ├── 5_scientist_agents.md │ │ ├── 5_scientist_team.json │ │ ├── 5_scientist_team.md │ │ ├── 6_generic_single.json │ │ ├── 6_generic_single.md │ │ ├── 6_generic_team.json │ │ ├── 6_generic_team.md │ │ ├── 6_scientist_agents.json │ │ ├── 6_scientist_agents.md │ │ ├── 6_scientist_team.json │ │ ├── 6_scientist_team.md │ │ ├── 7_generic_single.json │ │ ├── 7_generic_single.md │ │ ├── 7_generic_team.json │ │ ├── 7_generic_team.md │ │ ├── 7_scientist_agents.json │ │ ├── 7_scientist_agents.md │ │ ├── 7_scientist_team.json │ │ ├── 7_scientist_team.md │ │ ├── 8_generic_single.json │ │ ├── 8_generic_single.md │ │ ├── 8_generic_team.json │ │ ├── 8_generic_team.md │ │ ├── 8_scientist_agents.json │ │ ├── 8_scientist_agents.md │ │ ├── 8_scientist_team.json │ │ ├── 8_scientist_team.md │ │ ├── 9_generic_single.json │ │ ├── 9_generic_single.md │ │ ├── 9_generic_team.json │ │ ├── 9_generic_team.md │ │ ├── 9_scientist_agents.json │ │ ├── 9_scientist_agents.md │ │ ├── 9_scientist_team.json │ │ ├── 9_scientist_team.md │ │ └── blinded │ │ │ ├── 10_1.md │ │ │ ├── 10_2.md │ │ │ ├── 10_3.md │ │ │ ├── 11_1.md │ │ │ ├── 11_2.md │ │ │ ├── 11_3.md │ │ │ ├── 12_1.md │ │ │ ├── 12_2.md │ │ │ ├── 12_3.md │ │ │ ├── 13_1.md │ │ │ ├── 13_2.md │ │ │ ├── 13_3.md │ │ │ ├── 14_1.md │ │ │ ├── 14_2.md │ │ │ ├── 14_3.md │ │ │ ├── 15_1.md │ │ │ ├── 15_2.md │ │ │ ├── 15_3.md │ │ │ ├── 16_1.md │ │ │ ├── 16_2.md │ │ │ ├── 16_3.md │ │ │ ├── 17_1.md │ │ │ ├── 17_2.md │ │ │ ├── 17_3.md │ │ │ ├── 18_1.md │ │ │ ├── 18_2.md │ │ │ ├── 18_3.md │ │ │ ├── 19_1.md │ │ │ ├── 19_2.md │ │ │ ├── 19_3.md │ │ │ ├── 1_1.md │ │ │ ├── 1_2.md │ │ │ ├── 1_3.md │ │ │ ├── 20_1.md │ │ │ ├── 20_2.md │ │ │ ├── 20_3.md │ │ │ ├── 21_1.md │ │ │ ├── 21_2.md │ │ │ ├── 21_3.md │ │ │ ├── 22_1.md │ │ │ ├── 22_2.md │ │ │ ├── 22_3.md │ │ │ ├── 23_1.md │ │ │ ├── 23_2.md │ │ │ ├── 23_3.md │ │ │ ├── 24_1.md │ │ │ ├── 24_2.md │ │ │ ├── 24_3.md │ │ │ ├── 25_1.md │ │ │ ├── 25_2.md │ │ │ ├── 25_3.md │ │ │ ├── 26_1.md │ │ │ ├── 26_2.md │ │ │ ├── 26_3.md │ │ │ ├── 27_1.md │ │ │ ├── 27_2.md │ │ │ ├── 27_3.md │ │ │ ├── 28_1.md │ │ │ ├── 28_2.md │ │ │ ├── 28_3.md │ │ │ ├── 29_1.md │ │ │ ├── 29_2.md │ │ │ ├── 29_3.md │ │ │ ├── 2_1.md │ │ │ ├── 2_2.md │ │ │ ├── 2_3.md │ │ │ ├── 30_1.md │ │ │ ├── 30_2.md │ │ │ ├── 30_3.md │ │ │ ├── 3_1.md │ │ │ ├── 3_2.md │ │ │ ├── 3_3.md │ │ │ ├── 4_1.md │ │ │ ├── 4_2.md │ │ │ ├── 4_3.md │ │ │ ├── 5_1.md │ │ │ ├── 5_2.md │ │ │ ├── 5_3.md │ │ │ ├── 6_1.md │ │ │ ├── 6_2.md │ │ │ ├── 6_3.md │ │ │ ├── 7_1.md │ │ │ ├── 7_2.md │ │ │ ├── 7_3.md │ │ │ ├── 8_1.md │ │ │ ├── 8_2.md │ │ │ ├── 8_3.md │ │ │ ├── 9_1.md │ │ │ ├── 9_2.md │ │ │ ├── 9_3.md │ │ │ ├── order.json │ │ │ ├── rankings.csv │ │ │ ├── rankings.pdf │ │ │ ├── rankings_computational_biology.pdf │ │ │ └── rankings_protein_engineering.pdf │ ├── implementation_agent_selection │ │ ├── discussion_1.json │ │ ├── discussion_1.md │ │ ├── discussion_2.json │ │ ├── discussion_2.md │ │ ├── discussion_3.json │ │ ├── discussion_3.md │ │ ├── discussion_4.json │ │ ├── discussion_4.md │ │ ├── discussion_5.json │ │ ├── discussion_5.md │ │ ├── merged.json │ │ └── merged.md │ ├── project_specification │ │ ├── discussion_1.json │ │ ├── discussion_1.md │ │ ├── discussion_2.json │ │ ├── discussion_2.md │ │ ├── discussion_3.json │ │ ├── discussion_3.md │ │ ├── discussion_4.json │ │ ├── discussion_4.md │ │ ├── discussion_5.json │ │ ├── discussion_5.md │ │ ├── merged.json │ │ └── merged.md │ ├── rosetta │ │ ├── discussion_1.json │ │ ├── discussion_1.md │ │ ├── discussion_2.json │ │ ├── discussion_2.md │ │ ├── discussion_3.json │ │ ├── discussion_3.md │ │ ├── discussion_4.json │ │ ├── discussion_4.md │ │ ├── discussion_5.json │ │ ├── discussion_5.md │ │ ├── improved_python.json │ │ ├── improved_python.md │ │ ├── improved_xml.json │ │ ├── improved_xml.md │ │ ├── merged.json │ │ └── merged.md │ ├── team_selection │ │ ├── discussion_1.json │ │ ├── discussion_1.md │ │ ├── discussion_2.json │ │ ├── discussion_2.md │ │ ├── discussion_3.json │ │ ├── discussion_3.md │ │ ├── discussion_4.json │ │ ├── discussion_4.md │ │ ├── discussion_5.json │ │ ├── discussion_5.md │ │ ├── merged.json │ │ └── merged.md │ ├── tools_selection │ │ ├── discussion_1.json │ │ ├── discussion_1.md │ │ ├── discussion_2.json │ │ ├── discussion_2.md │ │ ├── discussion_3.json │ │ ├── discussion_3.md │ │ ├── discussion_4.json │ │ ├── discussion_4.md │ │ ├── discussion_5.json │ │ ├── discussion_5.md │ │ ├── merged.json │ │ └── merged.md │ ├── unpaired_cysteine │ │ ├── discussion_1.json │ │ ├── discussion_1.md │ │ ├── discussion_2.json │ │ ├── discussion_2.md │ │ ├── discussion_3.json │ │ ├── discussion_3.md │ │ ├── discussion_4.json │ │ ├── discussion_4.md │ │ ├── discussion_5.json │ │ ├── discussion_5.md │ │ ├── merged.json │ │ └── merged.md │ └── workflow_design │ │ ├── discussion_1.json │ │ ├── discussion_1.md │ │ ├── discussion_2.json │ │ ├── discussion_2.md │ │ ├── discussion_3.json │ │ ├── discussion_3.md │ │ ├── discussion_4.json │ │ ├── discussion_4.md │ │ ├── discussion_5.json │ │ ├── discussion_5.md │ │ ├── merged.json │ │ └── merged.md ├── experimental_data │ ├── H11-D4.txt │ ├── Nb21.txt │ ├── Ty1.txt │ ├── VHH-72.txt │ └── platemap.csv ├── figures │ ├── nanobody_analysis │ │ ├── H11-D4_final_esm_llr.pdf │ │ ├── H11-D4_final_rs_dg_vs_af_iplddt.pdf │ │ ├── H11-D4_rounds_esm_llr.pdf │ │ ├── H11-D4_rounds_rs_dg_vs_af_iplddt.pdf │ │ ├── H11-D4_weighted_score.pdf │ │ ├── Nb21_final_esm_llr.pdf │ │ ├── Nb21_final_rs_dg_vs_af_iplddt.pdf │ │ ├── Nb21_rounds_esm_llr.pdf │ │ ├── Nb21_rounds_rs_dg_vs_af_iplddt.pdf │ │ ├── Nb21_weighted_score.pdf │ │ ├── Ty1_final_esm_llr.pdf │ │ ├── Ty1_final_rs_dg_vs_af_iplddt.pdf │ │ ├── Ty1_rounds_esm_llr.pdf │ │ ├── Ty1_rounds_rs_dg_vs_af_iplddt.pdf │ │ ├── Ty1_weighted_score.pdf │ │ ├── VHH-72_final_esm_llr.pdf │ │ ├── VHH-72_final_rs_dg_vs_af_iplddt.pdf │ │ ├── VHH-72_rounds_esm_llr.pdf │ │ ├── VHH-72_rounds_rs_dg_vs_af_iplddt.pdf │ │ └── VHH-72_weighted_score.pdf │ └── virtual_lab_analysis │ │ ├── alphafold_words_written.pdf │ │ ├── esm_words_written.pdf │ │ ├── implementation_agent_selection_words_written.pdf │ │ ├── project_specification_words_written.pdf │ │ ├── rosetta_words_written.pdf │ │ ├── team_selection_words_written.pdf │ │ ├── tools_selection_words_written.pdf │ │ ├── total_words_written.pdf │ │ └── workflow_design_words_written.pdf ├── finetune_agents.ipynb ├── human_eval.ipynb ├── install_localcolabfold.sh ├── nanobody_constants.py ├── plot_results.ipynb ├── requirements_nanobody_design_frozen.txt ├── 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