├── .gitignore ├── LICENSE ├── README.md └── src ├── core ├── adni_model.py ├── eicu_model.py ├── gnn.py ├── mimic4_model.py ├── model.py └── run.py ├── dataset ├── adni_dataset.py ├── data.py ├── eicu_dataset.py ├── mimic4_dataset.py ├── tokenizer.py ├── utils.py └── vocab.py ├── encoder ├── code_encoder.py ├── ffn_encoder.py ├── rnn_encoder.py └── text_encoder.py ├── helper.py ├── metrics.py ├── preprocess ├── build_vocab_eicu.py ├── build_vocab_mimic4.py ├── data_split_adni.py ├── data_split_eicu.py ├── data_split_mimic4.py ├── get_code_embeddings.py ├── parse_adni_local.ipynb ├── parse_eicu_remote.ipynb ├── parse_mimic4_remote.ipynb ├── preprocess_adni.py ├── preprocess_eicu.py └── preprocess_mimic4.py └── utils.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/zzachw/MUSE/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENSE: 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