Bioconductor's Repositories

2022-09-12-BiocIntro-Heidelberg

Bioconductor introduction workshop in Heidelberg, as part of EuroBioc2021 |> 2022

⭐ 2 🌐 Public

2023-07-31-BiocRnaseq-Bioc2023

Bioconductor RNAseq workshop in Boston, as part of BioC2023

⭐ 1 🌐 Public

2023-09-18-BiocIntro-EuroBioc

Introduction to data analysis with R and Bioconductor, Ghent, Belgium

⭐ 1 🌐 Public

2023-09-18-RNASeq-EuroBioc

Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor

⭐ 0 🌐 Public

2024-07-22-BiocRnaseq-Bioc2024

Bioconductor RNAseq workshop in Grand Rapids, as part of BioC2024

⭐ 0 🌐 Public

2024-09-02-BiocIntro-EuroBioc

⭐ 0 🌐 Public

2024-09-02-RNASeq-EuroBioc

⭐ 0 🌐 Public

2024-09-03-BiocProject-EuroBioc

Website for EuroBioC2024 Introduction to Bioconductor project workshop

⭐ 0 🌐 Public

AdvancedR_stage1

Demo script-to-package for Advanced R Course, Seattle, October 2012, stage 1

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:warning: archived

⭐ 0 🌐 Public 📦 Archived

Chef cookbook to create AMI

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Annotation for microarrays

⭐ 0 🌐 Public

Bioconductor annotation workflow package

⭐ 0 🌐 Public

Manipulation of SQLite-based annotations in Bioconductor

⭐ 10 🌐 Public

AnnotationFilter

Facilities for Filtering Bioconductor Annotation Resources

⭐ 5 🌐 Public

AnnotationForge

Tools for building SQLite-based annotation data packages

⭐ 5 🌐 Public

Client for the Bioconductor AnnotationHub web resource

⭐ 20 🌐 Public

AnnotationHubData

Transform public data resources into Bioconductor Data Structures

⭐ 0 🌐 Public

AnnotationHubServer3.0

the ruby version of AnnotationHubServer

⭐ 1 🌐 Public

AnnotationHub_docker

Docker container for AnnotationHub

⭐ 0 🌐 Public

Interact with AnVIL and Leonardo projects

⭐ 8 🌐 Public

Docker containers for Anvil Project

⭐ 0 🌐 Public

The front-facing AnVIL user portal

⭐ 0 🌐 Public

R / Bioconductor Support for the AnVIL Azure Platform

⭐ 0 🌐 Public

⭐ 0 🌐 Public

Functionality for the AnVIL platform using GCP

⭐ 0 🌐 Public

Repo that corresponds to the AnVIL HMMRATAC workflow

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Administration repository for AnVIL project

⭐ 0 🌐 Public 📦 Archived

AnVIL_rapiclient

Dynamic Open API (Swagger) Client for R

⭐ 0 🌐 Public

⭐ 1 🌐 Public

Ansible playbook automating the post-release sync into OSN archive of previous release

⭐ 0 🌐 Public

Assessing abstracts for Bioconductor 2020 conference

⭐ 0 🌐 Public

auto-archive-release

Ansible playbook to archive a release using rsync and rclone via a VM

⭐ 0 🌐 Public

auxiliary_docker_containers

Docker containers relating to the Bioconductor project (unofficial)

⭐ 1 🌐 Public

Parallel evaluation using AWS infrastructure for Bioconductor objects

⭐ 0 🌐 Public

The Bioconductor Build System

⭐ 11 🌐 Public

BBS-provision-cookbook

⭐ 0 🌐 Public

BBS-provision-cookbook-mac

⭐ 1 🌐 Public

BBS-provision-cookbook-windows

⭐ 0 🌐 Public

⭐ 1 🌐 Public

BigDataAlgorithms

Algorithms for working with large, especially disk-based or sparse, data

⭐ 2 🌐 Public

Code base for replacement of stats.bioconductor.org (download_stats)

⭐ 1 🌐 Public

Biobase: Base functions for Bioconductor

⭐ 9 🌐 Public

⭐ 0 🌐 Public

bioc-common-python

⭐ 1 🌐 Public

bioc-keycloak-theme

⭐ 0 🌐 Public

Helper script for bioconductor/bioconductor_docker

⭐ 13 🌐 Public

⭐ 0 🌐 Public

Read and write GFF and GTF files

⭐ 0 🌐 Public

⭐ 0 🌐 Public

BioC2015Introduction

Introduction to R and Bioconductor session at BioC2015 July 20-22, Seattle, Wa

⭐ 4 🌐 Public

Bioc2015LintrCovr

Slides and Exercises for Bioc2015 Developer Day Presentation on Covr and Lintr.

⭐ 1 🌐 Public

BioC2016Introduction

⭐ 3 🌐 Public

BioC 2018: Where Software and Biology Connect

⭐ 5 🌐 Public

BioC2019: Where Software and Biology Connect

⭐ 6 🌐 Public

BioC2020: Where Software and Biology Connect

⭐ 12 🌐 Public

BioC2021: Where Software and Biology Connect

⭐ 6 🌐 Public

BioC2022 conference material

⭐ 4 🌐 Public

⭐ 0 🌐 Public

conference website for Bioconductor 2026

⭐ 0 🌐 Public

Building containers and holding some code for bioc2u, an attempt at extending r2u to all bioc packages, and provide precompiled binaries for ubuntu systems

⭐ 4 🌐 Public

Scripts for building bioc2u

⭐ 0 🌐 Public

RStudio Addins from Bioconductor

⭐ 2 🌐 Public

Advanced R / Bioconductor training material

⭐ 20 🌐 Public

prototypical project pkgdown site for BioC work on AnVIL

⭐ 0 🌐 Public

Match the CRAN archive repository with a previous Bioconductor release

⭐ 0 🌐 Public

⭐ 0 🌐 Public

BiocAsia2020 repository

⭐ 6 🌐 Public

BiocAsia2021 repository

⭐ 4 🌐 Public

⭐ 1 🌐 Public

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⭐ 0 🌐 Public

BiocAsiaPacific2015

Workshop and other material for BiocAsiaPacific activities in Tokyo, September 7-9 2015

⭐ 1 🌐 Public

⭐ 4 🌐 Public

BiocBinaryPackageTools

WIP package of ideas for querying available Bioconductor binary packages

⭐ 0 🌐 Public 📦 Archived

A Quarto blog for Bioconductor community

⭐ 16 🌐 Public

biocbranchrename

This is a test package for testing the branch renaming for Bioconductor

⭐ 0 🌐 Public

BiocCaseStudies

BiocCaseStudies: Support for the Case Studies Monograph

⭐ 0 🌐 Public

BiocCertificate

⭐ 0 🌐 Public

⭐ 9 🌐 Public

BiocClassesWorkingGroup

Notes and Discussion concerning recommended classes for Bioconductor

⭐ 3 🌐 Public

BiocContributions

⭐ 0 🌐 Public 📦 Archived

BiocDeployableQuarto

⭐ 1 🌐 Public

BiocDockerManager

Bioconductor package to manage docker images

⭐ 1 🌐 Public

preliminary investigation of biocViews in relation to EDAM ontology

⭐ 3 🌐 Public

Course material for EMBO / EBI course, Hinxton, UK, October 2015

⭐ 1 🌐 Public

Manage Files Across Sessions

⭐ 13 🌐 Public

Defines many S4 generic functions used in Bioconductor

⭐ 12 🌐 Public

Notes and tips for using github with Biocondcutor

⭐ 7 🌐 Public

Usage of Bioconductor packages on GPUs, available docker images for bioconductor-ml

⭐ 0 🌐 Public

⭐ 5 🌐 Public

Serve side code for Bioconductor Hubs

⭐ 2 🌐 Public

BiocHubsIngestR

Helper package for users to upload data to temporary BiocHubsIngest endpoints

⭐ 1 🌐 Public

⭐ 0 🌐 Public

Install / Update Bioconductor, CRAN, and github Packages

⭐ 6 🌐 Public

BiocInstaller_release

⭐ 0 🌐 Public

Course material for introductory R / Bioconductor courses

⭐ 44 🌐 Public